Gene : Glyma.08G254000 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2540
Name:  ? Glyma.08G254000 Secondary Identifier:  ? PAC:30539261
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G254000 0.5kb upstream 0.5kb upstream 4789 true Chr08: 22420229-22425017 Glycine max
Glyma.08G254000 0.5kb upstream 0.5kb upstream 500 false Chr08: 22420229-22420728 Glycine max
Glyma.08G254000 0.5kb downstream 0.5kb downstream 4789 true Chr08: 22420729-22425517 Glycine max
Glyma.08G254000 0.5kb downstream 0.5kb downstream 500 false Chr08: 22425018-22425517 Glycine max
Glyma.08G254000 1.0kb upstream 1.0kb upstream 5289 true Chr08: 22419729-22425017 Glycine max
Glyma.08G254000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 22419729-22420728 Glycine max
Glyma.08G254000 1.0kb downstream 1.0kb downstream 5289 true Chr08: 22420729-22426017 Glycine max
Glyma.08G254000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 22425018-22426017 Glycine max
Glyma.08G254000 2.0kb upstream 2.0kb upstream 6289 true Chr08: 22418729-22425017 Glycine max
Glyma.08G254000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 22418729-22420728 Glycine max
Glyma.08G254000 2.0kb downstream 2.0kb downstream 6289 true Chr08: 22420729-22427017 Glycine max
Glyma.08G254000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 22425018-22427017 Glycine max
Glyma.08G254000 5.0kb upstream 5.0kb upstream 9289 true Chr08: 22415729-22425017 Glycine max
Glyma.08G254000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 22415729-22420728 Glycine max
Glyma.08G254000 5.0kb downstream 5.0kb downstream 9289 true Chr08: 22420729-22430017 Glycine max
Glyma.08G254000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 22425018-22430017 Glycine max
Glyma.08G254000 10.0kb upstream 10.0kb upstream 14289 true Chr08: 22410729-22425017 Glycine max
Glyma.08G254000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 22410729-22420728 Glycine max
Glyma.08G254000 10.0kb downstream 10.0kb downstream 14289 true Chr08: 22420729-22435017 Glycine max
Glyma.08G254000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 22425018-22435017 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302059 5265 Fabidae View MSA
124061005 5270 Rosid View MSA
123740775 5271 Pentapetalae View MSA
122785854 5272 Eudicot View MSA
122042693 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346514 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.73167 0.0 25.9628   High
cufflinks 6.75977 0.0 18.1612    
cufflinks 3.4494 0.0 9.68817   Low
cufflinks 6.72131 0.0 18.0525    
cufflinks 4.91857 0.0 13.4326    
cufflinks 2.55602 0.0 7.44496   Low
cufflinks 5.20073 0.0 14.1519    
cufflinks 6.40765 0.0 17.2448    
cufflinks 5.35638 0.0 14.5451    
cufflinks 5.117        
cufflinks 0.804       Low
cufflinks 4.343        
cufflinks 3.536        
cufflinks 2.749        
cufflinks 5.802     High  
cufflinks 9.351     High High
cufflinks 1.118       Low
cufflinks 4.126        
cufflinks 8.033     High  
cufflinks 9.704     High High
cufflinks 1.777        
cufflinks 9.148     High  
cufflinks 8.757     High  
cufflinks 1.516       Low
cufflinks 10.318     High High
cufflinks 0.893       Low

0 Strain