Gene : Glyma.08G254300 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2543
Name:  ? Glyma.08G254300 Secondary Identifier:  ? PAC:30535528
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G254300 0.5kb upstream 0.5kb upstream 3059 true Chr08: 22467839-22470897 Glycine max
Glyma.08G254300 0.5kb upstream 0.5kb upstream 500 false Chr08: 22470398-22470897 Glycine max
Glyma.08G254300 0.5kb downstream 0.5kb downstream 3059 true Chr08: 22467339-22470397 Glycine max
Glyma.08G254300 0.5kb downstream 0.5kb downstream 500 false Chr08: 22467339-22467838 Glycine max
Glyma.08G254300 1.0kb upstream 1.0kb upstream 3559 true Chr08: 22467839-22471397 Glycine max
Glyma.08G254300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 22470398-22471397 Glycine max
Glyma.08G254300 1.0kb downstream 1.0kb downstream 3559 true Chr08: 22466839-22470397 Glycine max
Glyma.08G254300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 22466839-22467838 Glycine max
Glyma.08G254300 2.0kb upstream 2.0kb upstream 4559 true Chr08: 22467839-22472397 Glycine max
Glyma.08G254300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 22470398-22472397 Glycine max
Glyma.08G254300 2.0kb downstream 2.0kb downstream 4559 true Chr08: 22465839-22470397 Glycine max
Glyma.08G254300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 22465839-22467838 Glycine max
Glyma.08G254300 5.0kb upstream 5.0kb upstream 7559 true Chr08: 22467839-22475397 Glycine max
Glyma.08G254300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 22470398-22475397 Glycine max
Glyma.08G254300 5.0kb downstream 5.0kb downstream 7559 true Chr08: 22462839-22470397 Glycine max
Glyma.08G254300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 22462839-22467838 Glycine max
Glyma.08G254300 10.0kb upstream 10.0kb upstream 12559 true Chr08: 22467839-22480397 Glycine max
Glyma.08G254300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 22470398-22480397 Glycine max
Glyma.08G254300 10.0kb downstream 10.0kb downstream 12559 true Chr08: 22457839-22470397 Glycine max
Glyma.08G254300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 22457839-22467838 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303266 5265 Fabidae View MSA
124063770 5270 Rosid View MSA
123736958 5271 Pentapetalae View MSA
122790433 5272 Eudicot View MSA
122047420 5273 Angiosperm View MSA
121310738 5274 Embryophyte View MSA
123348150 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.507244 0.0 1.83297   High
cufflinks 0.423173 0.0 1.54542    
cufflinks 0.272105 0.0 1.01435    
cufflinks 0.263038 0.0 0.984312    
cufflinks 0.242602 0.0 0.912857    
cufflinks 0.172562 0.0 0.658304 Low Low
cufflinks 0.394081 0.0 1.44767    
cufflinks 0.235383 0.0 0.886002    
cufflinks 0.379517 0.0 1.39512    
cufflinks 0.169        
cufflinks 0.104       Low
cufflinks 0.38        
cufflinks 0.493       High
cufflinks 0.799       High
cufflinks 0.184        
cufflinks 0.258        
cufflinks 0.244        
cufflinks 0.472        
cufflinks 0.459        
cufflinks 0.21        
cufflinks 0.094       Low
cufflinks 0.306        
cufflinks 0.38        
cufflinks 0.104       Low
cufflinks 0.334        
cufflinks 0.202        

0 Strain