Gene : Glyma.08G256600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2566
Name:  ? Glyma.08G256600 Secondary Identifier:  ? PAC:30536859
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G256600 0.5kb upstream 0.5kb upstream 2248 true Chr08: 23045781-23048028 Glycine max
Glyma.08G256600 0.5kb upstream 0.5kb upstream 500 false Chr08: 23045781-23046280 Glycine max
Glyma.08G256600 0.5kb downstream 0.5kb downstream 2248 true Chr08: 23046281-23048528 Glycine max
Glyma.08G256600 0.5kb downstream 0.5kb downstream 500 false Chr08: 23048029-23048528 Glycine max
Glyma.08G256600 1.0kb upstream 1.0kb upstream 2748 true Chr08: 23045281-23048028 Glycine max
Glyma.08G256600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 23045281-23046280 Glycine max
Glyma.08G256600 1.0kb downstream 1.0kb downstream 2748 true Chr08: 23046281-23049028 Glycine max
Glyma.08G256600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 23048029-23049028 Glycine max
Glyma.08G256600 2.0kb upstream 2.0kb upstream 3748 true Chr08: 23044281-23048028 Glycine max
Glyma.08G256600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 23044281-23046280 Glycine max
Glyma.08G256600 2.0kb downstream 2.0kb downstream 3748 true Chr08: 23046281-23050028 Glycine max
Glyma.08G256600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 23048029-23050028 Glycine max
Glyma.08G256600 5.0kb upstream 5.0kb upstream 6748 true Chr08: 23041281-23048028 Glycine max
Glyma.08G256600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 23041281-23046280 Glycine max
Glyma.08G256600 5.0kb downstream 5.0kb downstream 6748 true Chr08: 23046281-23053028 Glycine max
Glyma.08G256600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 23048029-23053028 Glycine max
Glyma.08G256600 10.0kb upstream 10.0kb upstream 11748 true Chr08: 23036281-23048028 Glycine max
Glyma.08G256600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 23036281-23046280 Glycine max
Glyma.08G256600 10.0kb downstream 10.0kb downstream 11748 true Chr08: 23046281-23058028 Glycine max
Glyma.08G256600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 23048029-23058028 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.88895 0.0 6.61369    
cufflinks 2.76834 0.0 9.28074    
cufflinks 0.464686 0.0 1.76028    
cufflinks 2.84493 0.0 9.50751    
cufflinks 3.1861 0.0 10.5458    
cufflinks 0.634643 0.0 2.37453    
cufflinks 0.126364 0.0 0.505314 Low Low
cufflinks 14.4136 0.0 39.377   High
cufflinks 2.39576 0.0 8.17041    
cufflinks 50.986     High High
cufflinks 1.778        
cufflinks 1.588        
cufflinks 3.102        
cufflinks 0.24       Low
cufflinks 0.301       Low
cufflinks 2.482        
cufflinks 69.102     High High
cufflinks 2.009        
cufflinks 1.112        
cufflinks 1.008        
cufflinks 5.016        
cufflinks 2.674        
cufflinks 6.125        
cufflinks 4.757        
cufflinks 1.631        
cufflinks 22.8     High High

0 Strain