Gene : Glyma.08G258000 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR10627 - SCP160 Genomic Order:  2580
Name:  ? Glyma.08G258000 Secondary Identifier:  ? PAC:30538746
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G258000 0.5kb upstream 0.5kb upstream 2581 true Chr08: 23209790-23212370 Glycine max
Glyma.08G258000 0.5kb upstream 0.5kb upstream 500 false Chr08: 23209790-23210289 Glycine max
Glyma.08G258000 0.5kb downstream 0.5kb downstream 2581 true Chr08: 23210290-23212870 Glycine max
Glyma.08G258000 0.5kb downstream 0.5kb downstream 500 false Chr08: 23212371-23212870 Glycine max
Glyma.08G258000 1.0kb upstream 1.0kb upstream 3081 true Chr08: 23209290-23212370 Glycine max
Glyma.08G258000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 23209290-23210289 Glycine max
Glyma.08G258000 1.0kb downstream 1.0kb downstream 3081 true Chr08: 23210290-23213370 Glycine max
Glyma.08G258000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 23212371-23213370 Glycine max
Glyma.08G258000 2.0kb upstream 2.0kb upstream 4081 true Chr08: 23208290-23212370 Glycine max
Glyma.08G258000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 23208290-23210289 Glycine max
Glyma.08G258000 2.0kb downstream 2.0kb downstream 4081 true Chr08: 23210290-23214370 Glycine max
Glyma.08G258000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 23212371-23214370 Glycine max
Glyma.08G258000 5.0kb upstream 5.0kb upstream 7081 true Chr08: 23205290-23212370 Glycine max
Glyma.08G258000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 23205290-23210289 Glycine max
Glyma.08G258000 5.0kb downstream 5.0kb downstream 7081 true Chr08: 23210290-23217370 Glycine max
Glyma.08G258000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 23212371-23217370 Glycine max
Glyma.08G258000 10.0kb upstream 10.0kb upstream 12081 true Chr08: 23200290-23212370 Glycine max
Glyma.08G258000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 23200290-23210289 Glycine max
Glyma.08G258000 10.0kb downstream 10.0kb downstream 12081 true Chr08: 23210290-23222370 Glycine max
Glyma.08G258000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 23212371-23222370 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312404 5265 Fabidae View MSA
124071735 5270 Rosid View MSA
123744350 5271 Pentapetalae View MSA
122788002 5272 Eudicot View MSA
122041679 5273 Angiosperm View MSA
121347667 5274 Embryophyte View MSA
123380594 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.1565 0.0 17.1232    
cufflinks 4.99627 0.0 14.2241    
cufflinks 5.55522 0.0 15.68    
cufflinks 4.1537 0.0 12.0821    
cufflinks 5.02328 0.0 14.2308    
cufflinks 4.46261 0.0 12.8442    
cufflinks 8.36744 0.0 22.741   High
cufflinks 2.89803 0.0 8.86039   Low
cufflinks 5.22194 0.0 14.7761    
cufflinks 1.279       Low
cufflinks 6.335     High High
cufflinks 4.193        
cufflinks 2.594        
cufflinks 2.262       Low
cufflinks 3.566        
cufflinks 5.052        
cufflinks 3.106        
cufflinks 2.891        
cufflinks 4.064        
cufflinks 5.443        
cufflinks 5.422        
cufflinks 4.855        
cufflinks 3.955        
cufflinks 5.907       High
cufflinks 5.074        
cufflinks 4.301        

0 Strain