Gene : Glyma.08G294400 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  2944
Name:  ? Glyma.08G294400 Secondary Identifier:  ? PAC:30536333
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G294400 0.5kb upstream 0.5kb upstream 3535 true Chr08: 40961026-40964560 Glycine max
Glyma.08G294400 0.5kb upstream 0.5kb upstream 500 false Chr08: 40961026-40961525 Glycine max
Glyma.08G294400 0.5kb downstream 0.5kb downstream 3535 true Chr08: 40961526-40965060 Glycine max
Glyma.08G294400 0.5kb downstream 0.5kb downstream 500 false Chr08: 40964561-40965060 Glycine max
Glyma.08G294400 1.0kb upstream 1.0kb upstream 4035 true Chr08: 40960526-40964560 Glycine max
Glyma.08G294400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40960526-40961525 Glycine max
Glyma.08G294400 1.0kb downstream 1.0kb downstream 4035 true Chr08: 40961526-40965560 Glycine max
Glyma.08G294400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40964561-40965560 Glycine max
Glyma.08G294400 2.0kb upstream 2.0kb upstream 5035 true Chr08: 40959526-40964560 Glycine max
Glyma.08G294400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40959526-40961525 Glycine max
Glyma.08G294400 2.0kb downstream 2.0kb downstream 5035 true Chr08: 40961526-40966560 Glycine max
Glyma.08G294400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40964561-40966560 Glycine max
Glyma.08G294400 5.0kb upstream 5.0kb upstream 8035 true Chr08: 40956526-40964560 Glycine max
Glyma.08G294400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40956526-40961525 Glycine max
Glyma.08G294400 5.0kb downstream 5.0kb downstream 8035 true Chr08: 40961526-40969560 Glycine max
Glyma.08G294400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40964561-40969560 Glycine max
Glyma.08G294400 10.0kb upstream 10.0kb upstream 13035 true Chr08: 40951526-40964560 Glycine max
Glyma.08G294400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40951526-40961525 Glycine max
Glyma.08G294400 10.0kb downstream 10.0kb downstream 13035 true Chr08: 40961526-40974560 Glycine max
Glyma.08G294400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40964561-40974560 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299042 5265 Fabidae View MSA
124065100 5270 Rosid View MSA
123738721 5271 Pentapetalae View MSA
122787826 5272 Eudicot View MSA
122045787 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310503 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.00037 0.0 3.38386    
cufflinks 0.997199 0.0 3.36982    
cufflinks 0.397703 0.0 1.44585   Low
cufflinks 0.874965 0.0 2.99792    
cufflinks 0.688709 0.0 2.4198    
cufflinks 0.80649 0.0 2.78798    
cufflinks 1.12104 0.0 3.74385   High
cufflinks 0.631521 0.0 2.2312    
cufflinks 0.899906 0.0 3.07782    
cufflinks 0.586        
cufflinks 0.184       Low
cufflinks 1.185        
cufflinks 0.83        
cufflinks 0.98        
cufflinks 0.43        
cufflinks 1.071        
cufflinks 0.212       Low
cufflinks 1.353        
cufflinks 1.286        
cufflinks 1.129        
cufflinks 0.258       Low
cufflinks 1.157        
cufflinks 1.287        
cufflinks 0.238       Low
cufflinks 1.047        
cufflinks 0.164       Low

0 Strain