Gene : Glyma.08G296500 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG3046 - Transcription factor, subunit of SRB subcomplex of RNA polymerase II Genomic Order:  2965
Name:  ? Glyma.08G296500 Secondary Identifier:  ? PAC:30540112
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G296500 0.5kb upstream 0.5kb upstream 5401 true Chr08: 41241857-41247257 Glycine max
Glyma.08G296500 0.5kb upstream 0.5kb upstream 500 false Chr08: 41246758-41247257 Glycine max
Glyma.08G296500 0.5kb downstream 0.5kb downstream 5401 true Chr08: 41241357-41246757 Glycine max
Glyma.08G296500 0.5kb downstream 0.5kb downstream 500 false Chr08: 41241357-41241856 Glycine max
Glyma.08G296500 1.0kb upstream 1.0kb upstream 5901 true Chr08: 41241857-41247757 Glycine max
Glyma.08G296500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 41246758-41247757 Glycine max
Glyma.08G296500 1.0kb downstream 1.0kb downstream 5901 true Chr08: 41240857-41246757 Glycine max
Glyma.08G296500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 41240857-41241856 Glycine max
Glyma.08G296500 2.0kb upstream 2.0kb upstream 6901 true Chr08: 41241857-41248757 Glycine max
Glyma.08G296500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 41246758-41248757 Glycine max
Glyma.08G296500 2.0kb downstream 2.0kb downstream 6901 true Chr08: 41239857-41246757 Glycine max
Glyma.08G296500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 41239857-41241856 Glycine max
Glyma.08G296500 5.0kb upstream 5.0kb upstream 9901 true Chr08: 41241857-41251757 Glycine max
Glyma.08G296500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 41246758-41251757 Glycine max
Glyma.08G296500 5.0kb downstream 5.0kb downstream 9901 true Chr08: 41236857-41246757 Glycine max
Glyma.08G296500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 41236857-41241856 Glycine max
Glyma.08G296500 10.0kb upstream 10.0kb upstream 14901 true Chr08: 41241857-41256757 Glycine max
Glyma.08G296500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 41246758-41256757 Glycine max
Glyma.08G296500 10.0kb downstream 10.0kb downstream 14901 true Chr08: 41231857-41246757 Glycine max
Glyma.08G296500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 41231857-41241856 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301301 5265 Fabidae View MSA
124062321 5270 Rosid View MSA
123743947 5271 Pentapetalae View MSA
122790703 5272 Eudicot View MSA
122043326 5273 Angiosperm View MSA
121345853 5274 Embryophyte View MSA
123425675 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4621 0.0 28.7618   Low
cufflinks 13.185 0.0 35.6812    
cufflinks 13.9148 0.0 37.5327    
cufflinks 13.1177 0.0 35.5108    
cufflinks 12.5239 0.0 34.0171    
cufflinks 15.2903 0.0 41.0973   High
cufflinks 13.5827 0.0 36.7507    
cufflinks 12.9876 0.0 35.18    
cufflinks 12.1125 0.0 32.9448    
cufflinks 4.888        
cufflinks 4.472        
cufflinks 4.153       Low
cufflinks 4.318        
cufflinks 4.407        
cufflinks 5.923     High High
cufflinks 4.734        
cufflinks 5.05        
cufflinks 3.771       Low
cufflinks 4.769        
cufflinks 4.623        
cufflinks 4.714        
cufflinks 4.666        
cufflinks 4.104       Low
cufflinks 4.512        
cufflinks 4.352        
cufflinks 4.83        

0 Strain