Gene : Glyma.08G287300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13208 - MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 Genomic Order:  2873
Name:  ? Glyma.08G287300 Secondary Identifier:  ? PAC:30541256
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G287300 0.5kb upstream 0.5kb upstream 5268 true Chr08: 39785206-39790473 Glycine max
Glyma.08G287300 0.5kb upstream 0.5kb upstream 500 false Chr08: 39785206-39785705 Glycine max
Glyma.08G287300 0.5kb downstream 0.5kb downstream 5268 true Chr08: 39785706-39790973 Glycine max
Glyma.08G287300 0.5kb downstream 0.5kb downstream 500 false Chr08: 39790474-39790973 Glycine max
Glyma.08G287300 1.0kb upstream 1.0kb upstream 5768 true Chr08: 39784706-39790473 Glycine max
Glyma.08G287300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39784706-39785705 Glycine max
Glyma.08G287300 1.0kb downstream 1.0kb downstream 5768 true Chr08: 39785706-39791473 Glycine max
Glyma.08G287300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39790474-39791473 Glycine max
Glyma.08G287300 2.0kb upstream 2.0kb upstream 6768 true Chr08: 39783706-39790473 Glycine max
Glyma.08G287300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39783706-39785705 Glycine max
Glyma.08G287300 2.0kb downstream 2.0kb downstream 6768 true Chr08: 39785706-39792473 Glycine max
Glyma.08G287300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39790474-39792473 Glycine max
Glyma.08G287300 5.0kb upstream 5.0kb upstream 9768 true Chr08: 39780706-39790473 Glycine max
Glyma.08G287300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39780706-39785705 Glycine max
Glyma.08G287300 5.0kb downstream 5.0kb downstream 9768 true Chr08: 39785706-39795473 Glycine max
Glyma.08G287300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39790474-39795473 Glycine max
Glyma.08G287300 10.0kb upstream 10.0kb upstream 14768 true Chr08: 39775706-39790473 Glycine max
Glyma.08G287300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39775706-39785705 Glycine max
Glyma.08G287300 10.0kb downstream 10.0kb downstream 14768 true Chr08: 39785706-39800473 Glycine max
Glyma.08G287300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39790474-39800473 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315116 5265 Fabidae View MSA
124063104 5270 Rosid View MSA
123737443 5271 Pentapetalae View MSA
122786979 5272 Eudicot View MSA
122042269 5273 Angiosperm View MSA
121345208 5274 Embryophyte View MSA
123380175 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.83406 0.0 13.9148    
cufflinks 4.16154 0.0 14.7339    
cufflinks 3.59218 0.0 13.267    
cufflinks 5.60806 0.0 18.438   High
cufflinks 5.37803 0.0 17.7628   High
cufflinks 1.95614 0.0 6.63776   Low
cufflinks 2.22023 0.0 7.31455   Low
cufflinks 4.2468 0.0 14.7903    
cufflinks 3.62034 0.0 13.2609    
cufflinks 1.207        
cufflinks 2.206       High
cufflinks 1.277        
cufflinks 1.949       High
cufflinks 2.097       High
cufflinks 1.195        
cufflinks 0.933        
cufflinks 0.958        
cufflinks 1.379        
cufflinks 1.638        
cufflinks 0.75       Low
cufflinks 1.887        
cufflinks 0.816       Low
cufflinks 1.219        
cufflinks 2.187       High
cufflinks 0.809       Low
cufflinks 1.356        

0 Strain