Gene : Glyma.08G287700 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR12606:SF28 - UBIQUITIN-LIKE-SPECIFIC PROTEASE 1C-RELATED Genomic Order:  2877
Name:  ? Glyma.08G287700 Secondary Identifier:  ? PAC:30540884
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G287700 0.5kb upstream 0.5kb upstream 2604 true Chr08: 39875712-39878315 Glycine max
Glyma.08G287700 0.5kb upstream 0.5kb upstream 500 false Chr08: 39877816-39878315 Glycine max
Glyma.08G287700 0.5kb downstream 0.5kb downstream 2604 true Chr08: 39875212-39877815 Glycine max
Glyma.08G287700 0.5kb downstream 0.5kb downstream 500 false Chr08: 39875212-39875711 Glycine max
Glyma.08G287700 1.0kb upstream 1.0kb upstream 3104 true Chr08: 39875712-39878815 Glycine max
Glyma.08G287700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39877816-39878815 Glycine max
Glyma.08G287700 1.0kb downstream 1.0kb downstream 3104 true Chr08: 39874712-39877815 Glycine max
Glyma.08G287700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39874712-39875711 Glycine max
Glyma.08G287700 2.0kb upstream 2.0kb upstream 4104 true Chr08: 39875712-39879815 Glycine max
Glyma.08G287700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39877816-39879815 Glycine max
Glyma.08G287700 2.0kb downstream 2.0kb downstream 4104 true Chr08: 39873712-39877815 Glycine max
Glyma.08G287700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39873712-39875711 Glycine max
Glyma.08G287700 5.0kb upstream 5.0kb upstream 7104 true Chr08: 39875712-39882815 Glycine max
Glyma.08G287700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39877816-39882815 Glycine max
Glyma.08G287700 5.0kb downstream 5.0kb downstream 7104 true Chr08: 39870712-39877815 Glycine max
Glyma.08G287700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39870712-39875711 Glycine max
Glyma.08G287700 10.0kb upstream 10.0kb upstream 12104 true Chr08: 39875712-39887815 Glycine max
Glyma.08G287700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39877816-39887815 Glycine max
Glyma.08G287700 10.0kb downstream 10.0kb downstream 12104 true Chr08: 39865712-39877815 Glycine max
Glyma.08G287700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39865712-39875711 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248483 5265 Fabidae Singleton cluster - no MSA
124074830 5270 Rosid View MSA
123753730 5271 Pentapetalae View MSA
122794426 5272 Eudicot View MSA
122049176 5273 Angiosperm View MSA
123429184 5275 Viridiplantae View MSA
121311282 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.45214 0.0 8.97074    
cufflinks 3.18026 0.0 11.4424    
cufflinks 2.90814 0.0 10.4855    
cufflinks 2.60155 0.0 9.4644    
cufflinks 2.0197 0.0 7.45573    
cufflinks 0.551555 0.0 2.15876   Low
cufflinks 1.79781 0.0 6.68629    
cufflinks 1.91669 0.0 7.09255    
cufflinks 1.64555 0.0 6.13638    
cufflinks 1.718        
cufflinks 0.995       Low
cufflinks 2.081        
cufflinks 1.387        
cufflinks 1.43        
cufflinks 1.233        
cufflinks 3.369       High
cufflinks 0.775       Low
cufflinks 2.877        
cufflinks 3.829       High
cufflinks 3.957       High
cufflinks 0.97       Low
cufflinks 3.36       High
cufflinks 2.898        
cufflinks 1.01       Low
cufflinks 3.705       High
cufflinks 1.112        

0 Strain