Gene : Glyma.08G288100 G. max Wm82.a2.v1
Defline:  (1 of 16) 2.5.1.16 - Spermidine synthase / Putrescine aminopropyltransferase Genomic Order:  2881
Name:  ? Glyma.08G288100 Secondary Identifier:  ? PAC:30538961
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BSUBPOLYAMSYN-PWY Glycine max pathologic  
Gmax POLYAMINSYN3-PWY Glycine max pathologic  
Gmax PWY-7528 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G288100 0.5kb upstream 0.5kb upstream 9421 true Chr08: 40029586-40039006 Glycine max
Glyma.08G288100 0.5kb upstream 0.5kb upstream 500 false Chr08: 40029586-40030085 Glycine max
Glyma.08G288100 0.5kb downstream 0.5kb downstream 9421 true Chr08: 40030086-40039506 Glycine max
Glyma.08G288100 0.5kb downstream 0.5kb downstream 500 false Chr08: 40039007-40039506 Glycine max
Glyma.08G288100 1.0kb upstream 1.0kb upstream 9921 true Chr08: 40029086-40039006 Glycine max
Glyma.08G288100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40029086-40030085 Glycine max
Glyma.08G288100 1.0kb downstream 1.0kb downstream 9921 true Chr08: 40030086-40040006 Glycine max
Glyma.08G288100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40039007-40040006 Glycine max
Glyma.08G288100 2.0kb upstream 2.0kb upstream 10921 true Chr08: 40028086-40039006 Glycine max
Glyma.08G288100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40028086-40030085 Glycine max
Glyma.08G288100 2.0kb downstream 2.0kb downstream 10921 true Chr08: 40030086-40041006 Glycine max
Glyma.08G288100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40039007-40041006 Glycine max
Glyma.08G288100 5.0kb upstream 5.0kb upstream 13921 true Chr08: 40025086-40039006 Glycine max
Glyma.08G288100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40025086-40030085 Glycine max
Glyma.08G288100 5.0kb downstream 5.0kb downstream 13921 true Chr08: 40030086-40044006 Glycine max
Glyma.08G288100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40039007-40044006 Glycine max
Glyma.08G288100 10.0kb upstream 10.0kb upstream 18921 true Chr08: 40020086-40039006 Glycine max
Glyma.08G288100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40020086-40030085 Glycine max
Glyma.08G288100 10.0kb downstream 10.0kb downstream 18921 true Chr08: 40030086-40049006 Glycine max
Glyma.08G288100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40039007-40049006 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.44586 0.0 28.3018    
cufflinks 14.0913 0.0 52.5497    
cufflinks 27.7226 0.0 117.099 High High
cufflinks 25.3991 0.0 103.176 High High
cufflinks 8.43355 0.0 35.24    
cufflinks 2.83379 0.0 16.5691   Low
cufflinks 6.37018 0.0 27.4303    
cufflinks 10.0407 0.0 38.7589    
cufflinks 7.19565 0.0 30.4104    
cufflinks 3.246       High
cufflinks 0.162       Low
cufflinks 3.442       High
cufflinks 0.863        
cufflinks 0.792        
cufflinks 0.207       Low
cufflinks 1.259        
cufflinks 0.747        
cufflinks 10.1     High High
cufflinks 1.025        
cufflinks 1.135        
cufflinks 0.271       Low
cufflinks 1.129        
cufflinks 1.081        
cufflinks 0.18       Low
cufflinks 1.38        
cufflinks 0.433        

0 Strain