Gene : Glyma.08G290300 G. max Wm82.a2.v1
Defline:  (1 of 16) PTHR32285:SF57 - PROTEIN ALTERED XYLOGLUCAN 4 Genomic Order:  2903
Name:  ? Glyma.08G290300 Secondary Identifier:  ? PAC:30538728
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G290300 0.5kb upstream 0.5kb upstream 2965 true Chr08: 40353614-40356578 Glycine max
Glyma.08G290300 0.5kb upstream 0.5kb upstream 500 false Chr08: 40356079-40356578 Glycine max
Glyma.08G290300 0.5kb downstream 0.5kb downstream 2965 true Chr08: 40353114-40356078 Glycine max
Glyma.08G290300 0.5kb downstream 0.5kb downstream 500 false Chr08: 40353114-40353613 Glycine max
Glyma.08G290300 1.0kb upstream 1.0kb upstream 3465 true Chr08: 40353614-40357078 Glycine max
Glyma.08G290300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40356079-40357078 Glycine max
Glyma.08G290300 1.0kb downstream 1.0kb downstream 3465 true Chr08: 40352614-40356078 Glycine max
Glyma.08G290300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40352614-40353613 Glycine max
Glyma.08G290300 2.0kb upstream 2.0kb upstream 4465 true Chr08: 40353614-40358078 Glycine max
Glyma.08G290300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40356079-40358078 Glycine max
Glyma.08G290300 2.0kb downstream 2.0kb downstream 4465 true Chr08: 40351614-40356078 Glycine max
Glyma.08G290300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40351614-40353613 Glycine max
Glyma.08G290300 5.0kb upstream 5.0kb upstream 7465 true Chr08: 40353614-40361078 Glycine max
Glyma.08G290300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40356079-40361078 Glycine max
Glyma.08G290300 5.0kb downstream 5.0kb downstream 7465 true Chr08: 40348614-40356078 Glycine max
Glyma.08G290300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40348614-40353613 Glycine max
Glyma.08G290300 10.0kb upstream 10.0kb upstream 12465 true Chr08: 40353614-40366078 Glycine max
Glyma.08G290300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40356079-40366078 Glycine max
Glyma.08G290300 10.0kb downstream 10.0kb downstream 12465 true Chr08: 40343614-40356078 Glycine max
Glyma.08G290300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40343614-40353613 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030324 5273 Angiosperm View MSA
122240129 5265 Fabidae Singleton cluster - no MSA
123985248 5270 Rosid Singleton cluster - no MSA
123560692 5271 Pentapetalae Singleton cluster - no MSA
122595489 5272 Eudicot Singleton cluster - no MSA
121299513 5274 Embryophyte View MSA
123337376 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.538921 0.0 3.81744   Low
cufflinks 2.1073 0.0 11.3864    
cufflinks 0.405198 0.0 2.69939   Low
cufflinks 1.32412 0.0 8.20147    
cufflinks 2.41083 0.0 12.8007    
cufflinks 1.65533 0.0 9.2097    
cufflinks 2.93143 0.0 13.1005   High
cufflinks 2.48386 0.0 13.1792    
cufflinks 1.38172 0.0 5.28494    
cufflinks 0.353        
cufflinks 0.066       Low
cufflinks 0.616        
cufflinks 1.686       High
cufflinks 2.769       High
cufflinks 0.054       Low
cufflinks 0.354        
cufflinks 0.128        
cufflinks 0.749        
cufflinks 1.133       High
cufflinks 0.4        
cufflinks 0.101       Low
cufflinks 0.42        
cufflinks 0.48        
cufflinks 0.228        
cufflinks 0.264        
cufflinks 0.119        

0 Strain