Gene : Glyma.08G291500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  2915
Name:  ? Glyma.08G291500 Secondary Identifier:  ? PAC:30539255
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G291500 0.5kb upstream 0.5kb upstream 1355 true Chr08: 40539310-40540664 Glycine max
Glyma.08G291500 0.5kb upstream 0.5kb upstream 500 false Chr08: 40540165-40540664 Glycine max
Glyma.08G291500 0.5kb downstream 0.5kb downstream 1355 true Chr08: 40538810-40540164 Glycine max
Glyma.08G291500 0.5kb downstream 0.5kb downstream 500 false Chr08: 40538810-40539309 Glycine max
Glyma.08G291500 1.0kb upstream 1.0kb upstream 1855 true Chr08: 40539310-40541164 Glycine max
Glyma.08G291500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40540165-40541164 Glycine max
Glyma.08G291500 1.0kb downstream 1.0kb downstream 1855 true Chr08: 40538310-40540164 Glycine max
Glyma.08G291500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40538310-40539309 Glycine max
Glyma.08G291500 2.0kb upstream 2.0kb upstream 2855 true Chr08: 40539310-40542164 Glycine max
Glyma.08G291500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40540165-40542164 Glycine max
Glyma.08G291500 2.0kb downstream 2.0kb downstream 2855 true Chr08: 40537310-40540164 Glycine max
Glyma.08G291500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40537310-40539309 Glycine max
Glyma.08G291500 5.0kb upstream 5.0kb upstream 5855 true Chr08: 40539310-40545164 Glycine max
Glyma.08G291500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40540165-40545164 Glycine max
Glyma.08G291500 5.0kb downstream 5.0kb downstream 5855 true Chr08: 40534310-40540164 Glycine max
Glyma.08G291500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40534310-40539309 Glycine max
Glyma.08G291500 10.0kb upstream 10.0kb upstream 10855 true Chr08: 40539310-40550164 Glycine max
Glyma.08G291500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40540165-40550164 Glycine max
Glyma.08G291500 10.0kb downstream 10.0kb downstream 10855 true Chr08: 40529310-40540164 Glycine max
Glyma.08G291500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40529310-40539309 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
122314712 5265 Fabidae View MSA
124036919 5270 Rosid View MSA
123610099 5271 Pentapetalae View MSA
122644733 5272 Eudicot View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.3835 0.0 170.983 High  
cufflinks 70.6328 0.0 216.72 High  
cufflinks 64.6765 0.0 198.717 High  
cufflinks 56.034 0.0 175.715 High  
cufflinks 61.2901 0.0 188.811 High  
cufflinks 62.9449 0.0 196.64 High  
cufflinks 115.395 0.0 328.566 High High
cufflinks 64.7501 0.0 198.907 High  
cufflinks 56.6424 0.0 177.711 High  
cufflinks 31.818     High  
cufflinks 18.396     High Low
cufflinks 33.704     High  
cufflinks 44.199     High High
cufflinks 55.098     High High
cufflinks 14.515     High Low
cufflinks 33.871     High  
cufflinks 23.479     High  
cufflinks 39.682     High  
cufflinks 38.121     High  
cufflinks 37.492     High  
cufflinks 22.459     High  
cufflinks 38.294     High  
cufflinks 38.68     High  
cufflinks 22.696     High  
cufflinks 35.77     High  
cufflinks 26.292     High  

0 Strain