Gene : Glyma.08G330400 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3304
Name:  ? Glyma.08G330400 Secondary Identifier:  ? PAC:30537461
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G330400 0.5kb upstream 0.5kb upstream 3842 true Chr08: 44819827-44823668 Glycine max
Glyma.08G330400 0.5kb upstream 0.5kb upstream 500 false Chr08: 44819827-44820326 Glycine max
Glyma.08G330400 0.5kb downstream 0.5kb downstream 3842 true Chr08: 44820327-44824168 Glycine max
Glyma.08G330400 0.5kb downstream 0.5kb downstream 500 false Chr08: 44823669-44824168 Glycine max
Glyma.08G330400 1.0kb upstream 1.0kb upstream 4342 true Chr08: 44819327-44823668 Glycine max
Glyma.08G330400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 44819327-44820326 Glycine max
Glyma.08G330400 1.0kb downstream 1.0kb downstream 4342 true Chr08: 44820327-44824668 Glycine max
Glyma.08G330400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 44823669-44824668 Glycine max
Glyma.08G330400 2.0kb upstream 2.0kb upstream 5342 true Chr08: 44818327-44823668 Glycine max
Glyma.08G330400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 44818327-44820326 Glycine max
Glyma.08G330400 2.0kb downstream 2.0kb downstream 5342 true Chr08: 44820327-44825668 Glycine max
Glyma.08G330400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 44823669-44825668 Glycine max
Glyma.08G330400 5.0kb upstream 5.0kb upstream 8342 true Chr08: 44815327-44823668 Glycine max
Glyma.08G330400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 44815327-44820326 Glycine max
Glyma.08G330400 5.0kb downstream 5.0kb downstream 8342 true Chr08: 44820327-44828668 Glycine max
Glyma.08G330400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 44823669-44828668 Glycine max
Glyma.08G330400 10.0kb upstream 10.0kb upstream 13342 true Chr08: 44810327-44823668 Glycine max
Glyma.08G330400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 44810327-44820326 Glycine max
Glyma.08G330400 10.0kb downstream 10.0kb downstream 13342 true Chr08: 44820327-44833668 Glycine max
Glyma.08G330400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 44823669-44833668 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.0218 0.0 125.93 High  
cufflinks 42.028 0.0 112.282 High Low
cufflinks 45.8899 0.0 122.801 High  
cufflinks 97.4064 0.0 275.039 High High
cufflinks 64.5607 0.0 175.685 High  
cufflinks 106.712 0.0 304.322 High High
cufflinks 51.2614 0.0 137.609 High  
cufflinks 104.772 0.0 298.345 High High
cufflinks 61.2433 0.0 166.026 High  
cufflinks 30.779     High High
cufflinks 24.995     High High
cufflinks 12.145     High  
cufflinks 22.909     High  
cufflinks 17.097     High  
cufflinks 10.333     High  
cufflinks 10.184     High  
cufflinks 23.481     High  
cufflinks 14.846     High  
cufflinks 11.769     High  
cufflinks 10.062     High  
cufflinks 22.344     High  
cufflinks 10.637     High  
cufflinks 7.84     High Low
cufflinks 28.279     High High
cufflinks 9.068     High Low
cufflinks 21.282     High  

0 Strain