Gene : Glyma.08G333800 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG2227 - Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase Genomic Order:  3338
Name:  ? Glyma.08G333800 Secondary Identifier:  ? PAC:30538931
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G333800 0.5kb upstream 0.5kb upstream 5982 true Chr08: 45115194-45121175 Glycine max
Glyma.08G333800 0.5kb upstream 0.5kb upstream 500 false Chr08: 45120676-45121175 Glycine max
Glyma.08G333800 0.5kb downstream 0.5kb downstream 5982 true Chr08: 45114694-45120675 Glycine max
Glyma.08G333800 0.5kb downstream 0.5kb downstream 500 false Chr08: 45114694-45115193 Glycine max
Glyma.08G333800 1.0kb upstream 1.0kb upstream 6482 true Chr08: 45115194-45121675 Glycine max
Glyma.08G333800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 45120676-45121675 Glycine max
Glyma.08G333800 1.0kb downstream 1.0kb downstream 6482 true Chr08: 45114194-45120675 Glycine max
Glyma.08G333800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 45114194-45115193 Glycine max
Glyma.08G333800 2.0kb upstream 2.0kb upstream 7482 true Chr08: 45115194-45122675 Glycine max
Glyma.08G333800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 45120676-45122675 Glycine max
Glyma.08G333800 2.0kb downstream 2.0kb downstream 7482 true Chr08: 45113194-45120675 Glycine max
Glyma.08G333800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 45113194-45115193 Glycine max
Glyma.08G333800 5.0kb upstream 5.0kb upstream 10482 true Chr08: 45115194-45125675 Glycine max
Glyma.08G333800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 45120676-45125675 Glycine max
Glyma.08G333800 5.0kb downstream 5.0kb downstream 10482 true Chr08: 45110194-45120675 Glycine max
Glyma.08G333800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 45110194-45115193 Glycine max
Glyma.08G333800 10.0kb upstream 10.0kb upstream 15482 true Chr08: 45115194-45130675 Glycine max
Glyma.08G333800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 45120676-45130675 Glycine max
Glyma.08G333800 10.0kb downstream 10.0kb downstream 15482 true Chr08: 45105194-45120675 Glycine max
Glyma.08G333800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 45105194-45115193 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305447 5265 Fabidae View MSA
124062546 5270 Rosid View MSA
123739764 5271 Pentapetalae View MSA
122789561 5272 Eudicot View MSA
122043998 5273 Angiosperm View MSA
121345653 5274 Embryophyte View MSA
123426004 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.14765 0.0 0.57451 Low Low
cufflinks 4.11787 0.0 12.1062   High
cufflinks 0.553538 0.0 2.02405    
cufflinks 1.09962 0.0 3.82967    
cufflinks 3.35866 0.0 10.1422    
cufflinks 1.58982 0.0 5.32276    
cufflinks 0.90819 0.0 3.21968    
cufflinks 1.93588 0.0 6.324    
cufflinks 2.26012 0.0 7.22443    
cufflinks 0.701        
cufflinks 0.065       Low
cufflinks 0.565        
cufflinks 1.848       High
cufflinks 2.341       High
cufflinks 0.034     Low Low
cufflinks 0.675        
cufflinks 0.097        
cufflinks 0.339        
cufflinks 2.253       High
cufflinks 0.463        
cufflinks 0.071       Low
cufflinks 0.622        
cufflinks 1.287        
cufflinks 0.08       Low
cufflinks 0.522        
cufflinks 0.174        

0 Strain