Gene : Glyma.08G315200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34682:SF1 - AT HOOK MOTIF-CONTAINING PROTEIN Genomic Order:  3152
Name:  ? Glyma.08G315200 Secondary Identifier:  ? PAC:30535734
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G315200 0.5kb upstream 0.5kb upstream 5306 true Chr08: 43513149-43518454 Glycine max
Glyma.08G315200 0.5kb upstream 0.5kb upstream 500 false Chr08: 43517955-43518454 Glycine max
Glyma.08G315200 0.5kb downstream 0.5kb downstream 5306 true Chr08: 43512649-43517954 Glycine max
Glyma.08G315200 0.5kb downstream 0.5kb downstream 500 false Chr08: 43512649-43513148 Glycine max
Glyma.08G315200 1.0kb upstream 1.0kb upstream 5806 true Chr08: 43513149-43518954 Glycine max
Glyma.08G315200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 43517955-43518954 Glycine max
Glyma.08G315200 1.0kb downstream 1.0kb downstream 5806 true Chr08: 43512149-43517954 Glycine max
Glyma.08G315200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 43512149-43513148 Glycine max
Glyma.08G315200 2.0kb upstream 2.0kb upstream 6806 true Chr08: 43513149-43519954 Glycine max
Glyma.08G315200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 43517955-43519954 Glycine max
Glyma.08G315200 2.0kb downstream 2.0kb downstream 6806 true Chr08: 43511149-43517954 Glycine max
Glyma.08G315200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 43511149-43513148 Glycine max
Glyma.08G315200 5.0kb upstream 5.0kb upstream 9806 true Chr08: 43513149-43522954 Glycine max
Glyma.08G315200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 43517955-43522954 Glycine max
Glyma.08G315200 5.0kb downstream 5.0kb downstream 9806 true Chr08: 43508149-43517954 Glycine max
Glyma.08G315200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 43508149-43513148 Glycine max
Glyma.08G315200 10.0kb upstream 10.0kb upstream 14806 true Chr08: 43513149-43527954 Glycine max
Glyma.08G315200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 43517955-43527954 Glycine max
Glyma.08G315200 10.0kb downstream 10.0kb downstream 14806 true Chr08: 43503149-43517954 Glycine max
Glyma.08G315200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43503149-43513148 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302872 5265 Fabidae View MSA
124060982 5270 Rosid View MSA
123743810 5271 Pentapetalae View MSA
122794319 5272 Eudicot View MSA
122045641 5273 Angiosperm View MSA
121350221 5274 Embryophyte View MSA
123381629 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.2456 0.0 193.886 High High
cufflinks 29.2164 0.0 149.787 High  
cufflinks 34.7679 0.0 189.323 High  
cufflinks 28.1289 0.0 132.637 High  
cufflinks 31.085 0.0 148.842 High  
cufflinks 23.259 0.0 98.7475 High Low
cufflinks 30.5637 0.0 146.631 High  
cufflinks 34.3903 0.0 170.515 High  
cufflinks 31.1678 0.0 153.347 High  
cufflinks 2.02        
cufflinks 1.557       Low
cufflinks 2.64        
cufflinks 2.661        
cufflinks 3.237       High
cufflinks 2.197        
cufflinks 2.393        
cufflinks 1.831        
cufflinks 2.616        
cufflinks 2.6        
cufflinks 2.137        
cufflinks 1.722       Low
cufflinks 2.239        
cufflinks 2.972       High
cufflinks 1.91        
cufflinks 2.134        
cufflinks 1.849        

0 Strain