Gene : Glyma.08G310600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12300:SF27 - HVA22-LIKE PROTEIN F Genomic Order:  3106
Name:  ? Glyma.08G310600 Secondary Identifier:  ? PAC:30539160
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G310600 0.5kb upstream 0.5kb upstream 2952 true Chr08: 42990168-42993119 Glycine max
Glyma.08G310600 0.5kb upstream 0.5kb upstream 500 false Chr08: 42990168-42990667 Glycine max
Glyma.08G310600 0.5kb downstream 0.5kb downstream 2952 true Chr08: 42990668-42993619 Glycine max
Glyma.08G310600 0.5kb downstream 0.5kb downstream 500 false Chr08: 42993120-42993619 Glycine max
Glyma.08G310600 1.0kb upstream 1.0kb upstream 3452 true Chr08: 42989668-42993119 Glycine max
Glyma.08G310600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 42989668-42990667 Glycine max
Glyma.08G310600 1.0kb downstream 1.0kb downstream 3452 true Chr08: 42990668-42994119 Glycine max
Glyma.08G310600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 42993120-42994119 Glycine max
Glyma.08G310600 2.0kb upstream 2.0kb upstream 4452 true Chr08: 42988668-42993119 Glycine max
Glyma.08G310600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 42988668-42990667 Glycine max
Glyma.08G310600 2.0kb downstream 2.0kb downstream 4452 true Chr08: 42990668-42995119 Glycine max
Glyma.08G310600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 42993120-42995119 Glycine max
Glyma.08G310600 5.0kb upstream 5.0kb upstream 7452 true Chr08: 42985668-42993119 Glycine max
Glyma.08G310600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 42985668-42990667 Glycine max
Glyma.08G310600 5.0kb downstream 5.0kb downstream 7452 true Chr08: 42990668-42998119 Glycine max
Glyma.08G310600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 42993120-42998119 Glycine max
Glyma.08G310600 10.0kb upstream 10.0kb upstream 12452 true Chr08: 42980668-42993119 Glycine max
Glyma.08G310600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 42980668-42990667 Glycine max
Glyma.08G310600 10.0kb downstream 10.0kb downstream 12452 true Chr08: 42990668-43003119 Glycine max
Glyma.08G310600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 42993120-43003119 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313435 5265 Fabidae View MSA
124064261 5270 Rosid View MSA
123742916 5271 Pentapetalae View MSA
122793296 5272 Eudicot View MSA
122047958 5273 Angiosperm View MSA
121349779 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.342418 0.0 1.33236   Low
cufflinks 1.26754 0.0 4.63427    
cufflinks 2.00582 0.0 7.0865    
cufflinks 1.45737 0.0 5.28275    
cufflinks 3.01626 0.0 10.3559    
cufflinks 2.43332 0.0 8.51097    
cufflinks 0.137835 0.0 0.554713 Low Low
cufflinks 3.42125 0.0 11.5118    
cufflinks 3.85284 0.0 12.796    
cufflinks 3.503       High
cufflinks 1.676        
cufflinks 0.776        
cufflinks 4.463       High
cufflinks 1.272        
cufflinks 0.086       Low
cufflinks 0.99        
cufflinks 1.859        
cufflinks 2.407        
cufflinks 0.388       Low
cufflinks 1.196        
cufflinks 2.535        
cufflinks 1.422        
cufflinks 0.637        
cufflinks 1.381        
cufflinks 1.132        
cufflinks 2.428        

0 Strain