Gene : Glyma.08G312300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10314:SF98 - TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  3123
Name:  ? Glyma.08G312300 Secondary Identifier:  ? PAC:30538844
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRPSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.08G312300 0.5kb upstream 0.5kb upstream 5033 true Chr08: 43205280-43210312 Glycine max
Glyma.08G312300 0.5kb upstream 0.5kb upstream 500 false Chr08: 43205280-43205779 Glycine max
Glyma.08G312300 0.5kb downstream 0.5kb downstream 5033 true Chr08: 43205780-43210812 Glycine max
Glyma.08G312300 0.5kb downstream 0.5kb downstream 500 false Chr08: 43210313-43210812 Glycine max
Glyma.08G312300 1.0kb upstream 1.0kb upstream 5533 true Chr08: 43204780-43210312 Glycine max
Glyma.08G312300 1.0kb upstream 1.0kb upstream 1000 false Chr08: 43204780-43205779 Glycine max
Glyma.08G312300 1.0kb downstream 1.0kb downstream 5533 true Chr08: 43205780-43211312 Glycine max
Glyma.08G312300 1.0kb downstream 1.0kb downstream 1000 false Chr08: 43210313-43211312 Glycine max
Glyma.08G312300 2.0kb upstream 2.0kb upstream 6533 true Chr08: 43203780-43210312 Glycine max
Glyma.08G312300 2.0kb upstream 2.0kb upstream 2000 false Chr08: 43203780-43205779 Glycine max
Glyma.08G312300 2.0kb downstream 2.0kb downstream 6533 true Chr08: 43205780-43212312 Glycine max
Glyma.08G312300 2.0kb downstream 2.0kb downstream 2000 false Chr08: 43210313-43212312 Glycine max
Glyma.08G312300 5.0kb upstream 5.0kb upstream 9533 true Chr08: 43200780-43210312 Glycine max
Glyma.08G312300 5.0kb upstream 5.0kb upstream 5000 false Chr08: 43200780-43205779 Glycine max
Glyma.08G312300 5.0kb downstream 5.0kb downstream 9533 true Chr08: 43205780-43215312 Glycine max
Glyma.08G312300 5.0kb downstream 5.0kb downstream 5000 false Chr08: 43210313-43215312 Glycine max
Glyma.08G312300 10.0kb upstream 10.0kb upstream 14533 true Chr08: 43195780-43210312 Glycine max
Glyma.08G312300 10.0kb upstream 10.0kb upstream 10000 false Chr08: 43195780-43205779 Glycine max
Glyma.08G312300 10.0kb downstream 10.0kb downstream 14533 true Chr08: 43205780-43220312 Glycine max
Glyma.08G312300 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43210313-43220312 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304210 5265 Fabidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.9781 0.0 50.7819   High
cufflinks 16.1775 0.0 43.1694    
cufflinks 11.3181 0.0 30.3005    
cufflinks 14.0907 0.0 37.5974    
cufflinks 12.8501 0.0 34.3226    
cufflinks 9.41798 0.0 25.3903   Low
cufflinks 21.0699 0.0 56.5529   High
cufflinks 9.77096 0.0 26.3084   Low
cufflinks 10.941 0.0 29.3305    
cufflinks 6.603        
cufflinks 7.633     High  
cufflinks 7.534     High  
cufflinks 10.378     High  
cufflinks 9.206     High  
cufflinks 7.588     High  
cufflinks 13.213     High High
cufflinks 3.383       Low
cufflinks 7.094        
cufflinks 9.535     High  
cufflinks 10.145     High  
cufflinks 7.016     High  
cufflinks 11.885     High  
cufflinks 12.311     High High
cufflinks 10.411     High  
cufflinks 12.91     High High
cufflinks 8.126     High  

0 Strain