Gene : Glyma.09G024100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR19384:SF54 - FERREDOXIN--NADP REDUCTASE, ROOT ISOZYME 1, CHLOROPLASTIC-RELATED Genomic Order:  241
Name:  ? Glyma.09G024100 Secondary Identifier:  ? PAC:30482896
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G024100 0.5kb upstream 0.5kb upstream 4789 true Chr09: 1948136-1952924 Glycine max
Glyma.09G024100 0.5kb upstream 0.5kb upstream 500 false Chr09: 1948136-1948635 Glycine max
Glyma.09G024100 0.5kb downstream 0.5kb downstream 4789 true Chr09: 1948636-1953424 Glycine max
Glyma.09G024100 0.5kb downstream 0.5kb downstream 500 false Chr09: 1952925-1953424 Glycine max
Glyma.09G024100 1.0kb upstream 1.0kb upstream 5289 true Chr09: 1947636-1952924 Glycine max
Glyma.09G024100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 1947636-1948635 Glycine max
Glyma.09G024100 1.0kb downstream 1.0kb downstream 5289 true Chr09: 1948636-1953924 Glycine max
Glyma.09G024100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 1952925-1953924 Glycine max
Glyma.09G024100 2.0kb upstream 2.0kb upstream 6289 true Chr09: 1946636-1952924 Glycine max
Glyma.09G024100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 1946636-1948635 Glycine max
Glyma.09G024100 2.0kb downstream 2.0kb downstream 6289 true Chr09: 1948636-1954924 Glycine max
Glyma.09G024100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 1952925-1954924 Glycine max
Glyma.09G024100 5.0kb upstream 5.0kb upstream 9289 true Chr09: 1943636-1952924 Glycine max
Glyma.09G024100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 1943636-1948635 Glycine max
Glyma.09G024100 5.0kb downstream 5.0kb downstream 9289 true Chr09: 1948636-1957924 Glycine max
Glyma.09G024100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 1952925-1957924 Glycine max
Glyma.09G024100 10.0kb upstream 10.0kb upstream 14289 true Chr09: 1938636-1952924 Glycine max
Glyma.09G024100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 1938636-1948635 Glycine max
Glyma.09G024100 10.0kb downstream 10.0kb downstream 14289 true Chr09: 1948636-1962924 Glycine max
Glyma.09G024100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 1952925-1962924 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303230 5265 Fabidae View MSA
124064755 5270 Rosid View MSA
123736625 5271 Pentapetalae View MSA
122790491 5272 Eudicot View MSA
122045006 5273 Angiosperm View MSA
121347443 5274 Embryophyte View MSA
123424825 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6491 0.0 28.807   Low
cufflinks 16.0719 0.0 42.8997    
cufflinks 17.3626 0.0 46.3214    
cufflinks 11.0551 0.0 29.8203   Low
cufflinks 27.6976 0.0 74.5861 High  
cufflinks 37.855 0.0 104.101 High High
cufflinks 12.6488 0.0 33.9726    
cufflinks 20.3224 0.0 54.2792    
cufflinks 29.5211 0.0 79.8292 High High
cufflinks 9.543     High  
cufflinks 6.773     High  
cufflinks 9.807     High  
cufflinks 16.97     High High
cufflinks 16.827     High High
cufflinks 11.799     High  
cufflinks 3.259       Low
cufflinks 8.411     High  
cufflinks 9.205     High  
cufflinks 9.254     High  
cufflinks 2.388       Low
cufflinks 9.761     High  
cufflinks 2.935       Low
cufflinks 3.92        
cufflinks 11.033     High  
cufflinks 2.571       Low
cufflinks 12.908     High  

0 Strain