Gene : Glyma.09G008700 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  87
Name:  ? Glyma.09G008700 Secondary Identifier:  ? PAC:30484086
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G008700 0.5kb upstream 0.5kb upstream 5049 true Chr09: 681088-686136 Glycine max
Glyma.09G008700 0.5kb upstream 0.5kb upstream 500 false Chr09: 681088-681587 Glycine max
Glyma.09G008700 0.5kb downstream 0.5kb downstream 5049 true Chr09: 681588-686636 Glycine max
Glyma.09G008700 0.5kb downstream 0.5kb downstream 500 false Chr09: 686137-686636 Glycine max
Glyma.09G008700 1.0kb upstream 1.0kb upstream 5549 true Chr09: 680588-686136 Glycine max
Glyma.09G008700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 680588-681587 Glycine max
Glyma.09G008700 1.0kb downstream 1.0kb downstream 5549 true Chr09: 681588-687136 Glycine max
Glyma.09G008700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 686137-687136 Glycine max
Glyma.09G008700 2.0kb upstream 2.0kb upstream 6549 true Chr09: 679588-686136 Glycine max
Glyma.09G008700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 679588-681587 Glycine max
Glyma.09G008700 2.0kb downstream 2.0kb downstream 6549 true Chr09: 681588-688136 Glycine max
Glyma.09G008700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 686137-688136 Glycine max
Glyma.09G008700 5.0kb upstream 5.0kb upstream 9549 true Chr09: 676588-686136 Glycine max
Glyma.09G008700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 676588-681587 Glycine max
Glyma.09G008700 5.0kb downstream 5.0kb downstream 9549 true Chr09: 681588-691136 Glycine max
Glyma.09G008700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 686137-691136 Glycine max
Glyma.09G008700 10.0kb upstream 10.0kb upstream 14549 true Chr09: 671588-686136 Glycine max
Glyma.09G008700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 671588-681587 Glycine max
Glyma.09G008700 10.0kb downstream 10.0kb downstream 14549 true Chr09: 681588-696136 Glycine max
Glyma.09G008700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 686137-696136 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309341 5265 Fabidae View MSA
124074816 5270 Rosid View MSA
123749229 5271 Pentapetalae View MSA
122795391 5272 Eudicot View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0228044 0.0 0.103133 Low Low
cufflinks 0.0897197 0.0 0.366036 Low  
cufflinks 0.85583 0.0 3.17386    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.478286 0.0 1.82187    
cufflinks 10.8228 0.0 30.7756   High
cufflinks 0.0397347 0.0 0.171134 Low  
cufflinks 0.157392 0.0 0.626672 Low  
cufflinks 5.61764 0.0 17.4236   High
cufflinks 0.007     Low Low
cufflinks 3.023       High
cufflinks 0.284        
cufflinks 0.73        
cufflinks 0.186        
cufflinks 1.453       High
cufflinks 0.009     Low Low
cufflinks 0.559        
cufflinks 0.005     Low Low
cufflinks 0.027     Low  
cufflinks 0.017     Low  
cufflinks 2.417       High
cufflinks 0.008     Low Low
cufflinks 0.036     Low  
cufflinks 3.746       High
cufflinks 0.009     Low Low
cufflinks 0.568        

0 Strain