Gene : Glyma.09G052400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31065:SF14 - PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Genomic Order:  524
Name:  ? Glyma.09G052400 Secondary Identifier:  ? PAC:30483191
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G052400 0.5kb upstream 0.5kb upstream 6376 true Chr09: 4583416-4589791 Glycine max
Glyma.09G052400 0.5kb upstream 0.5kb upstream 500 false Chr09: 4589292-4589791 Glycine max
Glyma.09G052400 0.5kb downstream 0.5kb downstream 6376 true Chr09: 4582916-4589291 Glycine max
Glyma.09G052400 0.5kb downstream 0.5kb downstream 500 false Chr09: 4582916-4583415 Glycine max
Glyma.09G052400 1.0kb upstream 1.0kb upstream 6876 true Chr09: 4583416-4590291 Glycine max
Glyma.09G052400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 4589292-4590291 Glycine max
Glyma.09G052400 1.0kb downstream 1.0kb downstream 6876 true Chr09: 4582416-4589291 Glycine max
Glyma.09G052400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 4582416-4583415 Glycine max
Glyma.09G052400 2.0kb upstream 2.0kb upstream 7876 true Chr09: 4583416-4591291 Glycine max
Glyma.09G052400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 4589292-4591291 Glycine max
Glyma.09G052400 2.0kb downstream 2.0kb downstream 7876 true Chr09: 4581416-4589291 Glycine max
Glyma.09G052400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 4581416-4583415 Glycine max
Glyma.09G052400 5.0kb upstream 5.0kb upstream 10876 true Chr09: 4583416-4594291 Glycine max
Glyma.09G052400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 4589292-4594291 Glycine max
Glyma.09G052400 5.0kb downstream 5.0kb downstream 10876 true Chr09: 4578416-4589291 Glycine max
Glyma.09G052400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 4578416-4583415 Glycine max
Glyma.09G052400 10.0kb upstream 10.0kb upstream 15876 true Chr09: 4583416-4599291 Glycine max
Glyma.09G052400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 4589292-4599291 Glycine max
Glyma.09G052400 10.0kb downstream 10.0kb downstream 15876 true Chr09: 4573416-4589291 Glycine max
Glyma.09G052400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 4573416-4583415 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306364 5265 Fabidae View MSA
124068522 5270 Rosid View MSA
123747069 5271 Pentapetalae View MSA
122791391 5272 Eudicot View MSA
122044768 5273 Angiosperm View MSA
121349888 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.62736 0.0 11.4888   High
cufflinks 0.454431 0.0 1.71025    
cufflinks 0.27127 0.0 1.04525    
cufflinks 0.883006 0.0 3.22012    
cufflinks 0.3188 0.0 1.22125    
cufflinks 0.974974 0.0 3.53169    
cufflinks 2.45995 0.0 8.19826   High
cufflinks 0.219815 0.0 0.855346 Low Low
cufflinks 0.521       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.099     Low  
cufflinks 0.035     Low  
cufflinks 0.069     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.012     Low  
cufflinks 0.109     Low  
cufflinks 0.667       High
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.005     Low Low

0 Strain