Gene : Glyma.09G040100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR22888 - CYTOCHROME C OXIDASE, SUBUNIT II Genomic Order:  401
Name:  ? Glyma.09G040100 Secondary Identifier:  ? PAC:30486951
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3781 Glycine max pathologic  
Gmax PWY-7279 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G040100 0.5kb upstream 0.5kb upstream 4291 true Chr09: 3345765-3350055 Glycine max
Glyma.09G040100 0.5kb upstream 0.5kb upstream 500 false Chr09: 3345765-3346264 Glycine max
Glyma.09G040100 0.5kb downstream 0.5kb downstream 4291 true Chr09: 3346265-3350555 Glycine max
Glyma.09G040100 0.5kb downstream 0.5kb downstream 500 false Chr09: 3350056-3350555 Glycine max
Glyma.09G040100 1.0kb upstream 1.0kb upstream 4791 true Chr09: 3345265-3350055 Glycine max
Glyma.09G040100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3345265-3346264 Glycine max
Glyma.09G040100 1.0kb downstream 1.0kb downstream 4791 true Chr09: 3346265-3351055 Glycine max
Glyma.09G040100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3350056-3351055 Glycine max
Glyma.09G040100 2.0kb upstream 2.0kb upstream 5791 true Chr09: 3344265-3350055 Glycine max
Glyma.09G040100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3344265-3346264 Glycine max
Glyma.09G040100 2.0kb downstream 2.0kb downstream 5791 true Chr09: 3346265-3352055 Glycine max
Glyma.09G040100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3350056-3352055 Glycine max
Glyma.09G040100 5.0kb upstream 5.0kb upstream 8791 true Chr09: 3341265-3350055 Glycine max
Glyma.09G040100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3341265-3346264 Glycine max
Glyma.09G040100 5.0kb downstream 5.0kb downstream 8791 true Chr09: 3346265-3355055 Glycine max
Glyma.09G040100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3350056-3355055 Glycine max
Glyma.09G040100 10.0kb upstream 10.0kb upstream 13791 true Chr09: 3336265-3350055 Glycine max
Glyma.09G040100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3336265-3346264 Glycine max
Glyma.09G040100 10.0kb downstream 10.0kb downstream 13791 true Chr09: 3346265-3360055 Glycine max
Glyma.09G040100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3350056-3360055 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027311 5273 Angiosperm View MSA
122254877 5265 Fabidae View MSA
124070743 5270 Rosid View MSA
123743967 5271 Pentapetalae View MSA
122795698 5272 Eudicot View MSA
121348321 5274 Embryophyte View MSA
123428300 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 121.231 0.0 387.28 High  
cufflinks 124.789 0.0 402.881 High  
cufflinks 215.305 0.0 799.164 High  
cufflinks 133.522 0.0 436.616 High  
cufflinks 211.498 0.0 763.342 High  
cufflinks 266.443 0.0 1033.63 High High
cufflinks 115.862 0.0 365.175 High Low
cufflinks 159.093 0.0 540.513 High  
cufflinks 326.206 0.0 1352.3 High High
cufflinks 113.779     High  
cufflinks 53.173     High Low
cufflinks 98.66     High  
cufflinks 158.25     High High
cufflinks 175.415     High High
cufflinks 189.332     High High
cufflinks 73.137     High  
cufflinks 47.982     High Low
cufflinks 121.446     High  
cufflinks 73.857     High  
cufflinks 66.069     High  
cufflinks 56.837     High  
cufflinks 69.202     High  
cufflinks 71.042     High  
cufflinks 58.149     High  
cufflinks 74.128     High  
cufflinks 64.567     High  

0 Strain