Gene : Glyma.09G040400 G. max Wm82.a2.v1
Defline:  (1 of 39) PF00407 - Pathogenesis-related protein Bet v I family (Bet_v_1) Genomic Order:  404
Name:  ? Glyma.09G040400 Secondary Identifier:  ? PAC:30485783
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G040400 0.5kb upstream 0.5kb upstream 1840 true Chr09: 3364728-3366567 Glycine max
Glyma.09G040400 0.5kb upstream 0.5kb upstream 500 false Chr09: 3364728-3365227 Glycine max
Glyma.09G040400 0.5kb downstream 0.5kb downstream 1840 true Chr09: 3365228-3367067 Glycine max
Glyma.09G040400 0.5kb downstream 0.5kb downstream 500 false Chr09: 3366568-3367067 Glycine max
Glyma.09G040400 1.0kb upstream 1.0kb upstream 2340 true Chr09: 3364228-3366567 Glycine max
Glyma.09G040400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3364228-3365227 Glycine max
Glyma.09G040400 1.0kb downstream 1.0kb downstream 2340 true Chr09: 3365228-3367567 Glycine max
Glyma.09G040400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3366568-3367567 Glycine max
Glyma.09G040400 2.0kb upstream 2.0kb upstream 3340 true Chr09: 3363228-3366567 Glycine max
Glyma.09G040400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3363228-3365227 Glycine max
Glyma.09G040400 2.0kb downstream 2.0kb downstream 3340 true Chr09: 3365228-3368567 Glycine max
Glyma.09G040400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3366568-3368567 Glycine max
Glyma.09G040400 5.0kb upstream 5.0kb upstream 6340 true Chr09: 3360228-3366567 Glycine max
Glyma.09G040400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3360228-3365227 Glycine max
Glyma.09G040400 5.0kb downstream 5.0kb downstream 6340 true Chr09: 3365228-3371567 Glycine max
Glyma.09G040400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3366568-3371567 Glycine max
Glyma.09G040400 10.0kb upstream 10.0kb upstream 11340 true Chr09: 3355228-3366567 Glycine max
Glyma.09G040400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3355228-3365227 Glycine max
Glyma.09G040400 10.0kb downstream 10.0kb downstream 11340 true Chr09: 3365228-3376567 Glycine max
Glyma.09G040400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3366568-3376567 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312983 5265 Fabidae View MSA
124072279 5270 Rosid View MSA
123752390 5271 Pentapetalae View MSA
122797871 5272 Eudicot View MSA
122048225 5273 Angiosperm View MSA
121351454 5274 Embryophyte View MSA
123382173 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.00482 0.0 7.16148    
cufflinks 1.09895 0.0 4.07161    
cufflinks 0.804772 0.0 3.02316    
cufflinks 0.316783 0.0 1.23883    
cufflinks 0.586001 0.0 2.23217    
cufflinks 3.53342 0.0 11.9719   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0816649 0.0 0.338194 Low Low
cufflinks 2.86559 0.0 9.92342    
cufflinks 4.604        
cufflinks 3.278        
cufflinks 4.459        
cufflinks 0.095       Low
cufflinks 0.517        
cufflinks 4.438        
cufflinks 0.127       Low
cufflinks 0.098       Low
cufflinks 8.613     High High
cufflinks 7.083        
cufflinks 0.243       Low
cufflinks 3.435        
cufflinks 1.848        
cufflinks 11.218     High High
cufflinks 3.227        
cufflinks 0.174       Low
cufflinks 1.854        

0 Strain