Gene : Glyma.09G042400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR14155:SF99 - RING-H2 FINGER PROTEIN ATL3 Genomic Order:  424
Name:  ? Glyma.09G042400 Secondary Identifier:  ? PAC:30484163
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G042400 0.5kb upstream 0.5kb upstream 2003 true Chr09: 3612058-3614060 Glycine max
Glyma.09G042400 0.5kb upstream 0.5kb upstream 500 false Chr09: 3613561-3614060 Glycine max
Glyma.09G042400 0.5kb downstream 0.5kb downstream 2003 true Chr09: 3611558-3613560 Glycine max
Glyma.09G042400 0.5kb downstream 0.5kb downstream 500 false Chr09: 3611558-3612057 Glycine max
Glyma.09G042400 1.0kb upstream 1.0kb upstream 2503 true Chr09: 3612058-3614560 Glycine max
Glyma.09G042400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 3613561-3614560 Glycine max
Glyma.09G042400 1.0kb downstream 1.0kb downstream 2503 true Chr09: 3611058-3613560 Glycine max
Glyma.09G042400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 3611058-3612057 Glycine max
Glyma.09G042400 2.0kb upstream 2.0kb upstream 3503 true Chr09: 3612058-3615560 Glycine max
Glyma.09G042400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 3613561-3615560 Glycine max
Glyma.09G042400 2.0kb downstream 2.0kb downstream 3503 true Chr09: 3610058-3613560 Glycine max
Glyma.09G042400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 3610058-3612057 Glycine max
Glyma.09G042400 5.0kb upstream 5.0kb upstream 6503 true Chr09: 3612058-3618560 Glycine max
Glyma.09G042400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 3613561-3618560 Glycine max
Glyma.09G042400 5.0kb downstream 5.0kb downstream 6503 true Chr09: 3607058-3613560 Glycine max
Glyma.09G042400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 3607058-3612057 Glycine max
Glyma.09G042400 10.0kb upstream 10.0kb upstream 11503 true Chr09: 3612058-3623560 Glycine max
Glyma.09G042400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 3613561-3623560 Glycine max
Glyma.09G042400 10.0kb downstream 10.0kb downstream 11503 true Chr09: 3602058-3613560 Glycine max
Glyma.09G042400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 3602058-3612057 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306119 5265 Fabidae View MSA
124069328 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.6243 0.0 133.155 High High
cufflinks 2.59445 0.0 8.61904    
cufflinks 4.39704 0.0 13.7227    
cufflinks 3.64151 0.0 11.558    
cufflinks 7.04266 0.0 20.176    
cufflinks 4.686 0.0 14.2254    
cufflinks 3.65689 0.0 11.5065    
cufflinks 4.94833 0.0 15.0375    
cufflinks 4.99919 0.0 15.0758    
cufflinks 45.007     High High
cufflinks 18.857     High  
cufflinks 21.483     High  
cufflinks 6.274        
cufflinks 1.167       Low
cufflinks 11.532     High  
cufflinks 17.961     High  
cufflinks 67.213     High High
cufflinks 33.825     High High
cufflinks 4.133       Low
cufflinks 9.482     High  
cufflinks 7.584     High  
cufflinks 10.192     High  
cufflinks 8.363     High  
cufflinks 15.595     High  
cufflinks 4.962        
cufflinks 12.735     High  

0 Strain