Gene : Glyma.09G056200 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  562
Name:  ? Glyma.09G056200 Secondary Identifier:  ? PAC:30486258
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G056200 0.5kb upstream 0.5kb upstream 3350 true Chr09: 5032035-5035384 Glycine max
Glyma.09G056200 0.5kb upstream 0.5kb upstream 500 false Chr09: 5034885-5035384 Glycine max
Glyma.09G056200 0.5kb downstream 0.5kb downstream 3350 true Chr09: 5031535-5034884 Glycine max
Glyma.09G056200 0.5kb downstream 0.5kb downstream 500 false Chr09: 5031535-5032034 Glycine max
Glyma.09G056200 1.0kb upstream 1.0kb upstream 3850 true Chr09: 5032035-5035884 Glycine max
Glyma.09G056200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5034885-5035884 Glycine max
Glyma.09G056200 1.0kb downstream 1.0kb downstream 3850 true Chr09: 5031035-5034884 Glycine max
Glyma.09G056200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5031035-5032034 Glycine max
Glyma.09G056200 2.0kb upstream 2.0kb upstream 4850 true Chr09: 5032035-5036884 Glycine max
Glyma.09G056200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5034885-5036884 Glycine max
Glyma.09G056200 2.0kb downstream 2.0kb downstream 4850 true Chr09: 5030035-5034884 Glycine max
Glyma.09G056200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5030035-5032034 Glycine max
Glyma.09G056200 5.0kb upstream 5.0kb upstream 7850 true Chr09: 5032035-5039884 Glycine max
Glyma.09G056200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5034885-5039884 Glycine max
Glyma.09G056200 5.0kb downstream 5.0kb downstream 7850 true Chr09: 5027035-5034884 Glycine max
Glyma.09G056200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5027035-5032034 Glycine max
Glyma.09G056200 10.0kb upstream 10.0kb upstream 12850 true Chr09: 5032035-5044884 Glycine max
Glyma.09G056200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5034885-5044884 Glycine max
Glyma.09G056200 10.0kb downstream 10.0kb downstream 12850 true Chr09: 5022035-5034884 Glycine max
Glyma.09G056200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5022035-5032034 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309903 5265 Fabidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.66829 0.0 14.3957   High
cufflinks 2.77318 0.0 10.0306    
cufflinks 1.02226 0.0 5.04931   Low
cufflinks 2.62752 0.0 11.3808    
cufflinks 1.53833 0.0 5.14678    
cufflinks 1.08359 0.0 3.94338   Low
cufflinks 2.04418 0.0 8.34279    
cufflinks 1.30227 0.0 4.50655    
cufflinks 1.83367 0.0 5.79366    
cufflinks 0.692        
cufflinks 0.057       Low
cufflinks 1.155        
cufflinks 0.564        
cufflinks 0.479        
cufflinks 0.237        
cufflinks 2.712       High
cufflinks 0.078       Low
cufflinks 1.303        
cufflinks 1.421        
cufflinks 3.087       High
cufflinks 0.118       Low
cufflinks 2.893       High
cufflinks 2.033        
cufflinks 0.153        
cufflinks 2.769       High
cufflinks 0.095       Low

0 Strain