Gene : Glyma.09G057400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11977//PTHR11977:SF47 - VILLIN Genomic Order:  574
Name:  ? Glyma.09G057400 Secondary Identifier:  ? PAC:30486955
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G057400 0.5kb upstream 0.5kb upstream 20767 true Chr09: 5173554-5194320 Glycine max
Glyma.09G057400 0.5kb upstream 0.5kb upstream 500 false Chr09: 5193821-5194320 Glycine max
Glyma.09G057400 0.5kb downstream 0.5kb downstream 20767 true Chr09: 5173054-5193820 Glycine max
Glyma.09G057400 0.5kb downstream 0.5kb downstream 500 false Chr09: 5173054-5173553 Glycine max
Glyma.09G057400 1.0kb upstream 1.0kb upstream 21267 true Chr09: 5173554-5194820 Glycine max
Glyma.09G057400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5193821-5194820 Glycine max
Glyma.09G057400 1.0kb downstream 1.0kb downstream 21267 true Chr09: 5172554-5193820 Glycine max
Glyma.09G057400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5172554-5173553 Glycine max
Glyma.09G057400 2.0kb upstream 2.0kb upstream 22267 true Chr09: 5173554-5195820 Glycine max
Glyma.09G057400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5193821-5195820 Glycine max
Glyma.09G057400 2.0kb downstream 2.0kb downstream 22267 true Chr09: 5171554-5193820 Glycine max
Glyma.09G057400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5171554-5173553 Glycine max
Glyma.09G057400 5.0kb upstream 5.0kb upstream 25267 true Chr09: 5173554-5198820 Glycine max
Glyma.09G057400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5193821-5198820 Glycine max
Glyma.09G057400 5.0kb downstream 5.0kb downstream 25267 true Chr09: 5168554-5193820 Glycine max
Glyma.09G057400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5168554-5173553 Glycine max
Glyma.09G057400 10.0kb upstream 10.0kb upstream 30267 true Chr09: 5173554-5203820 Glycine max
Glyma.09G057400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5193821-5203820 Glycine max
Glyma.09G057400 10.0kb downstream 10.0kb downstream 30267 true Chr09: 5163554-5193820 Glycine max
Glyma.09G057400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5163554-5173553 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314834 5265 Fabidae View MSA
124062762 5270 Rosid View MSA
123741669 5271 Pentapetalae View MSA
122793328 5272 Eudicot View MSA
122050203 5273 Angiosperm View MSA
121349269 5274 Embryophyte View MSA
123428280 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.86127 0.0 33.7519   Low
cufflinks 10.7052 0.0 36.8495    
cufflinks 12.1549 0.0 42.4527    
cufflinks 24.0735 0.0 96.2203 High High
cufflinks 17.1584 0.0 62.7645    
cufflinks 31.5593 0.0 117.423 High High
cufflinks 14.7101 0.0 52.4265    
cufflinks 20.4036 0.0 78.0567    
cufflinks 10.9446 0.0 37.7366    
cufflinks 3.096       High
cufflinks 1.165        
cufflinks 1.486        
cufflinks 2.659       High
cufflinks 2.373       High
cufflinks 0.439       Low
cufflinks 1.223        
cufflinks 1.853        
cufflinks 1.991        
cufflinks 1.511        
cufflinks 1.064        
cufflinks 1.193        
cufflinks 1.149        
cufflinks 1.161        
cufflinks 1.181        
cufflinks 1.079        
cufflinks 1.309        

0 Strain