Gene : Glyma.09G058600 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  586
Name:  ? Glyma.09G058600 Secondary Identifier:  ? PAC:30486676
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G058600 0.5kb upstream 0.5kb upstream 3436 true Chr09: 5376776-5380211 Glycine max
Glyma.09G058600 0.5kb upstream 0.5kb upstream 500 false Chr09: 5379712-5380211 Glycine max
Glyma.09G058600 0.5kb downstream 0.5kb downstream 3436 true Chr09: 5376276-5379711 Glycine max
Glyma.09G058600 0.5kb downstream 0.5kb downstream 500 false Chr09: 5376276-5376775 Glycine max
Glyma.09G058600 1.0kb upstream 1.0kb upstream 3936 true Chr09: 5376776-5380711 Glycine max
Glyma.09G058600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 5379712-5380711 Glycine max
Glyma.09G058600 1.0kb downstream 1.0kb downstream 3936 true Chr09: 5375776-5379711 Glycine max
Glyma.09G058600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 5375776-5376775 Glycine max
Glyma.09G058600 2.0kb upstream 2.0kb upstream 4936 true Chr09: 5376776-5381711 Glycine max
Glyma.09G058600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 5379712-5381711 Glycine max
Glyma.09G058600 2.0kb downstream 2.0kb downstream 4936 true Chr09: 5374776-5379711 Glycine max
Glyma.09G058600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 5374776-5376775 Glycine max
Glyma.09G058600 5.0kb upstream 5.0kb upstream 7936 true Chr09: 5376776-5384711 Glycine max
Glyma.09G058600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 5379712-5384711 Glycine max
Glyma.09G058600 5.0kb downstream 5.0kb downstream 7936 true Chr09: 5371776-5379711 Glycine max
Glyma.09G058600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 5371776-5376775 Glycine max
Glyma.09G058600 10.0kb upstream 10.0kb upstream 12936 true Chr09: 5376776-5389711 Glycine max
Glyma.09G058600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 5379712-5389711 Glycine max
Glyma.09G058600 10.0kb downstream 10.0kb downstream 12936 true Chr09: 5366776-5379711 Glycine max
Glyma.09G058600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 5366776-5376775 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122249289 5265 Fabidae Singleton cluster - no MSA
124066554 5270 Rosid View MSA
123736416 5271 Pentapetalae View MSA
122796728 5272 Eudicot View MSA
122045085 5273 Angiosperm View MSA
121310395 5274 Embryophyte View MSA
123347889 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.1802 0.0 3.91588   High
cufflinks 0.801181 0.0 2.77683    
cufflinks 1.03607 0.0 3.46964    
cufflinks 0.790147 0.0 2.73872    
cufflinks 0.516034 0.0 1.85464   Low
cufflinks 0.41747 0.0 1.51851   Low
cufflinks 1.12257 0.0 3.74765   High
cufflinks 0.567643 0.0 2.02431    
cufflinks 0.725759 0.0 2.53813    
cufflinks 0.787       Low
cufflinks 1.693        
cufflinks 2.824        
cufflinks 1.129        
cufflinks 1.176        
cufflinks 1.445        
cufflinks 3.11        
cufflinks 0.741       Low
cufflinks 2.642        
cufflinks 2.771        
cufflinks 4.102       High
cufflinks 1.232        
cufflinks 3.862       High
cufflinks 3.378        
cufflinks 1.624        
cufflinks 3.833       High
cufflinks 0.74       Low

0 Strain