Gene : Glyma.09G104000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23270:SF10 - PROTEIN RRP5 HOMOLOG Genomic Order:  1040
Name:  ? Glyma.09G104000 Secondary Identifier:  ? PAC:30485785
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G104000 0.5kb upstream 0.5kb upstream 26062 true Chr09: 19352871-19378932 Glycine max
Glyma.09G104000 0.5kb upstream 0.5kb upstream 500 false Chr09: 19378433-19378932 Glycine max
Glyma.09G104000 0.5kb downstream 0.5kb downstream 26062 true Chr09: 19352371-19378432 Glycine max
Glyma.09G104000 0.5kb downstream 0.5kb downstream 500 false Chr09: 19352371-19352870 Glycine max
Glyma.09G104000 1.0kb upstream 1.0kb upstream 26562 true Chr09: 19352871-19379432 Glycine max
Glyma.09G104000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 19378433-19379432 Glycine max
Glyma.09G104000 1.0kb downstream 1.0kb downstream 26562 true Chr09: 19351871-19378432 Glycine max
Glyma.09G104000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 19351871-19352870 Glycine max
Glyma.09G104000 2.0kb upstream 2.0kb upstream 27562 true Chr09: 19352871-19380432 Glycine max
Glyma.09G104000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 19378433-19380432 Glycine max
Glyma.09G104000 2.0kb downstream 2.0kb downstream 27562 true Chr09: 19350871-19378432 Glycine max
Glyma.09G104000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 19350871-19352870 Glycine max
Glyma.09G104000 5.0kb upstream 5.0kb upstream 30562 true Chr09: 19352871-19383432 Glycine max
Glyma.09G104000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 19378433-19383432 Glycine max
Glyma.09G104000 5.0kb downstream 5.0kb downstream 30562 true Chr09: 19347871-19378432 Glycine max
Glyma.09G104000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 19347871-19352870 Glycine max
Glyma.09G104000 10.0kb upstream 10.0kb upstream 35562 true Chr09: 19352871-19388432 Glycine max
Glyma.09G104000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 19378433-19388432 Glycine max
Glyma.09G104000 10.0kb downstream 10.0kb downstream 35562 true Chr09: 19342871-19378432 Glycine max
Glyma.09G104000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 19342871-19352870 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303333 5265 Fabidae View MSA
124068160 5270 Rosid View MSA
123740236 5271 Pentapetalae View MSA
122787572 5272 Eudicot View MSA
122045709 5273 Angiosperm View MSA
121346258 5274 Embryophyte View MSA
123424813 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.04909 0.0 24.6617   High
cufflinks 4.92903 0.0 20.7994    
cufflinks 2.24726 0.0 11.5573   Low
cufflinks 3.40497 0.0 14.5704    
cufflinks 8.20924 0.0 29.1484   High
cufflinks 2.16847 0.0 7.91066   Low
cufflinks 6.25117 0.0 26.3653    
cufflinks 2.82214 0.0 9.89799    
cufflinks 5.21853 0.0 17.9175    
cufflinks 0.183        
cufflinks 0.066       Low
cufflinks 0.388        
cufflinks 0.852       High
cufflinks 1.151       High
cufflinks 0.109        
cufflinks 0.256        
cufflinks 0.16        
cufflinks 0.316        
cufflinks 0.557       High
cufflinks 0.145        
cufflinks 0.125        
cufflinks 0.183        
cufflinks 0.272        
cufflinks 0.085       Low
cufflinks 0.229        
cufflinks 0.203        

0 Strain