Gene : Glyma.09G083500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31747:SF3 - PROTEIN LSD1 Genomic Order:  835
Name:  ? Glyma.09G083500 Secondary Identifier:  ? PAC:30486101
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G083500 0.5kb upstream 0.5kb upstream 6500 true Chr09: 9997429-10003928 Glycine max
Glyma.09G083500 0.5kb upstream 0.5kb upstream 500 false Chr09: 9997429-9997928 Glycine max
Glyma.09G083500 0.5kb downstream 0.5kb downstream 6500 true Chr09: 9997929-10004428 Glycine max
Glyma.09G083500 0.5kb downstream 0.5kb downstream 500 false Chr09: 10003929-10004428 Glycine max
Glyma.09G083500 1.0kb upstream 1.0kb upstream 7000 true Chr09: 9996929-10003928 Glycine max
Glyma.09G083500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 9996929-9997928 Glycine max
Glyma.09G083500 1.0kb downstream 1.0kb downstream 7000 true Chr09: 9997929-10004928 Glycine max
Glyma.09G083500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10003929-10004928 Glycine max
Glyma.09G083500 2.0kb upstream 2.0kb upstream 8000 true Chr09: 9995929-10003928 Glycine max
Glyma.09G083500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 9995929-9997928 Glycine max
Glyma.09G083500 2.0kb downstream 2.0kb downstream 8000 true Chr09: 9997929-10005928 Glycine max
Glyma.09G083500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10003929-10005928 Glycine max
Glyma.09G083500 5.0kb upstream 5.0kb upstream 11000 true Chr09: 9992929-10003928 Glycine max
Glyma.09G083500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 9992929-9997928 Glycine max
Glyma.09G083500 5.0kb downstream 5.0kb downstream 11000 true Chr09: 9997929-10008928 Glycine max
Glyma.09G083500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10003929-10008928 Glycine max
Glyma.09G083500 10.0kb upstream 10.0kb upstream 16000 true Chr09: 9987929-10003928 Glycine max
Glyma.09G083500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 9987929-9997928 Glycine max
Glyma.09G083500 10.0kb downstream 10.0kb downstream 16000 true Chr09: 9997929-10013928 Glycine max
Glyma.09G083500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10003929-10013928 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250688 5265 Fabidae View MSA
123993790 5270 Rosid View MSA
123568516 5271 Pentapetalae View MSA
122603260 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.24365 0.0 21.1559    
cufflinks 2.70812 0.0 14.9085   Low
cufflinks 5.8341 0.0 29.8764   High
cufflinks 3.06938 0.0 13.0888    
cufflinks 2.97412 0.0 12.6376    
cufflinks 5.35771 0.0 19.1975   High
cufflinks 2.82101 0.0 12.4971   Low
cufflinks 4.38947 0.0 42.5353    
cufflinks 3.84073 0.0 31.5765    
cufflinks 0.76        
cufflinks 1.668       High
cufflinks 0.479        
cufflinks 0.44        
cufflinks 0.413        
cufflinks 0.89        
cufflinks 0.393        
cufflinks 1.474       High
cufflinks 0.345        
cufflinks 0.322        
cufflinks 0.286       Low
cufflinks 1.102        
cufflinks 0.33        
cufflinks 0.471        
cufflinks 1.347       High
cufflinks 0.322        
cufflinks 1.487       High

0 Strain