Gene : Glyma.09G089200 G. max Wm82.a2.v1
Defline:  (1 of 52) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  892
Name:  ? Glyma.09G089200 Secondary Identifier:  ? PAC:30484055
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G089200 0.5kb upstream 0.5kb upstream 5615 true Chr09: 11821512-11827126 Glycine max
Glyma.09G089200 0.5kb upstream 0.5kb upstream 500 false Chr09: 11821512-11822011 Glycine max
Glyma.09G089200 0.5kb downstream 0.5kb downstream 5615 true Chr09: 11822012-11827626 Glycine max
Glyma.09G089200 0.5kb downstream 0.5kb downstream 500 false Chr09: 11827127-11827626 Glycine max
Glyma.09G089200 1.0kb upstream 1.0kb upstream 6115 true Chr09: 11821012-11827126 Glycine max
Glyma.09G089200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11821012-11822011 Glycine max
Glyma.09G089200 1.0kb downstream 1.0kb downstream 6115 true Chr09: 11822012-11828126 Glycine max
Glyma.09G089200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11827127-11828126 Glycine max
Glyma.09G089200 2.0kb upstream 2.0kb upstream 7115 true Chr09: 11820012-11827126 Glycine max
Glyma.09G089200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11820012-11822011 Glycine max
Glyma.09G089200 2.0kb downstream 2.0kb downstream 7115 true Chr09: 11822012-11829126 Glycine max
Glyma.09G089200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11827127-11829126 Glycine max
Glyma.09G089200 5.0kb upstream 5.0kb upstream 10115 true Chr09: 11817012-11827126 Glycine max
Glyma.09G089200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11817012-11822011 Glycine max
Glyma.09G089200 5.0kb downstream 5.0kb downstream 10115 true Chr09: 11822012-11832126 Glycine max
Glyma.09G089200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11827127-11832126 Glycine max
Glyma.09G089200 10.0kb upstream 10.0kb upstream 15115 true Chr09: 11812012-11827126 Glycine max
Glyma.09G089200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11812012-11822011 Glycine max
Glyma.09G089200 10.0kb downstream 10.0kb downstream 15115 true Chr09: 11822012-11837126 Glycine max
Glyma.09G089200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11827127-11837126 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300768 5265 Fabidae View MSA
124068595 5270 Rosid View MSA
123745749 5271 Pentapetalae View MSA
122788083 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.667169 0.0 4.66457   High
cufflinks 0.273907 0.0 1.27131    
cufflinks 0.215811 0.0 1.03245    
cufflinks 0.346052 0.0 1.54293    
cufflinks 0.324886 0.0 1.47356    
cufflinks 0.140259 0.0 0.70075 Low Low
cufflinks 0.314079 0.0 1.40637    
cufflinks 0.281356 0.0 1.27681    
cufflinks 0.336595 0.0 1.5445    
cufflinks 0.102       Low
cufflinks 0.162        
cufflinks 0.258        
cufflinks 0.25        
cufflinks 0.35       High
cufflinks 0.207        
cufflinks 0.23        
cufflinks 0.193        
cufflinks 0.165        
cufflinks 0.327       High
cufflinks 0.248        
cufflinks 0.106       Low
cufflinks 0.27        
cufflinks 0.37       High
cufflinks 0.143       Low
cufflinks 0.233        
cufflinks 0.189        

0 Strain