Gene : Glyma.09G133200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  1332
Name:  ? Glyma.09G133200 Secondary Identifier:  ? PAC:30483031
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G133200 0.5kb upstream 0.5kb upstream 5210 true Chr09: 33084654-33089863 Glycine max
Glyma.09G133200 0.5kb upstream 0.5kb upstream 500 false Chr09: 33089364-33089863 Glycine max
Glyma.09G133200 0.5kb downstream 0.5kb downstream 5210 true Chr09: 33084154-33089363 Glycine max
Glyma.09G133200 0.5kb downstream 0.5kb downstream 500 false Chr09: 33084154-33084653 Glycine max
Glyma.09G133200 1.0kb upstream 1.0kb upstream 5710 true Chr09: 33084654-33090363 Glycine max
Glyma.09G133200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 33089364-33090363 Glycine max
Glyma.09G133200 1.0kb downstream 1.0kb downstream 5710 true Chr09: 33083654-33089363 Glycine max
Glyma.09G133200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 33083654-33084653 Glycine max
Glyma.09G133200 2.0kb upstream 2.0kb upstream 6710 true Chr09: 33084654-33091363 Glycine max
Glyma.09G133200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 33089364-33091363 Glycine max
Glyma.09G133200 2.0kb downstream 2.0kb downstream 6710 true Chr09: 33082654-33089363 Glycine max
Glyma.09G133200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 33082654-33084653 Glycine max
Glyma.09G133200 5.0kb upstream 5.0kb upstream 9710 true Chr09: 33084654-33094363 Glycine max
Glyma.09G133200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 33089364-33094363 Glycine max
Glyma.09G133200 5.0kb downstream 5.0kb downstream 9710 true Chr09: 33079654-33089363 Glycine max
Glyma.09G133200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 33079654-33084653 Glycine max
Glyma.09G133200 10.0kb upstream 10.0kb upstream 14710 true Chr09: 33084654-33099363 Glycine max
Glyma.09G133200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 33089364-33099363 Glycine max
Glyma.09G133200 10.0kb downstream 10.0kb downstream 14710 true Chr09: 33074654-33089363 Glycine max
Glyma.09G133200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 33074654-33084653 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308637 5265 Fabidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.9824 0.0 50.7803   High
cufflinks 6.48042 0.0 17.9262    
cufflinks 7.0722 0.0 19.4032    
cufflinks 4.54352 0.0 13.0292    
cufflinks 4.37949 0.0 12.611    
cufflinks 5.8988 0.0 16.4405    
cufflinks 3.64634 0.0 10.7666    
cufflinks 5.80171 0.0 16.1934    
cufflinks 2.97193 0.0 9.00839   Low
cufflinks 2.968        
cufflinks 1.502       Low
cufflinks 3.508        
cufflinks 2.045        
cufflinks 2.236        
cufflinks 2.558        
cufflinks 8.979     High High
cufflinks 1.897        
cufflinks 3.363        
cufflinks 4.151        
cufflinks 10.88     High High
cufflinks 1.652       Low
cufflinks 9.579     High High
cufflinks 8.755     High High
cufflinks 1.881        
cufflinks 9.547     High High
cufflinks 1.958        

0 Strain