Gene : Glyma.09G133600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF4 - SCARECROW-LIKE PROTEIN 8 Genomic Order:  1336
Name:  ? Glyma.09G133600 Secondary Identifier:  ? PAC:30485568
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G133600 0.5kb upstream 0.5kb upstream 4198 true Chr09: 33147945-33152142 Glycine max
Glyma.09G133600 0.5kb upstream 0.5kb upstream 500 false Chr09: 33151643-33152142 Glycine max
Glyma.09G133600 0.5kb downstream 0.5kb downstream 4198 true Chr09: 33147445-33151642 Glycine max
Glyma.09G133600 0.5kb downstream 0.5kb downstream 500 false Chr09: 33147445-33147944 Glycine max
Glyma.09G133600 1.0kb upstream 1.0kb upstream 4698 true Chr09: 33147945-33152642 Glycine max
Glyma.09G133600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 33151643-33152642 Glycine max
Glyma.09G133600 1.0kb downstream 1.0kb downstream 4698 true Chr09: 33146945-33151642 Glycine max
Glyma.09G133600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 33146945-33147944 Glycine max
Glyma.09G133600 2.0kb upstream 2.0kb upstream 5698 true Chr09: 33147945-33153642 Glycine max
Glyma.09G133600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 33151643-33153642 Glycine max
Glyma.09G133600 2.0kb downstream 2.0kb downstream 5698 true Chr09: 33145945-33151642 Glycine max
Glyma.09G133600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 33145945-33147944 Glycine max
Glyma.09G133600 5.0kb upstream 5.0kb upstream 8698 true Chr09: 33147945-33156642 Glycine max
Glyma.09G133600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 33151643-33156642 Glycine max
Glyma.09G133600 5.0kb downstream 5.0kb downstream 8698 true Chr09: 33142945-33151642 Glycine max
Glyma.09G133600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 33142945-33147944 Glycine max
Glyma.09G133600 10.0kb upstream 10.0kb upstream 13698 true Chr09: 33147945-33161642 Glycine max
Glyma.09G133600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 33151643-33161642 Glycine max
Glyma.09G133600 10.0kb downstream 10.0kb downstream 13698 true Chr09: 33137945-33151642 Glycine max
Glyma.09G133600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 33137945-33147944 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242932 5265 Fabidae Singleton cluster - no MSA
124040533 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.90182 0.0 18.8028   Low
cufflinks 5.91532 0.0 16.3381   Low
cufflinks 10.2656 0.0 27.5324    
cufflinks 11.0469 0.0 29.5335    
cufflinks 9.12315 0.0 24.4793    
cufflinks 11.226 0.0 29.9864    
cufflinks 11.2431 0.0 30.0322    
cufflinks 7.24985 0.0 19.7166    
cufflinks 9.40358 0.0 25.2364    
cufflinks 11.493     High  
cufflinks 8.627     High  
cufflinks 13.607     High  
cufflinks 3.728        
cufflinks 2.005       Low
cufflinks 18.785     High High
cufflinks 6.172        
cufflinks 52.82     High High
cufflinks 9.054     High  
cufflinks 3.737        
cufflinks 4.982        
cufflinks 7.37     High  
cufflinks 4.711        
cufflinks 3.997        
cufflinks 7.89     High  
cufflinks 5.338        
cufflinks 14.512     High  

0 Strain