Gene : Glyma.09G136600 G. max Wm82.a2.v1
Defline:  (1 of 24) 1.14.11.2 - Procollagen-proline dioxygenase / Protocollagen hydroxylase Genomic Order:  1366
Name:  ? Glyma.09G136600 Secondary Identifier:  ? PAC:30485070
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G136600 0.5kb upstream 0.5kb upstream 4419 true Chr09: 33849177-33853595 Glycine max
Glyma.09G136600 0.5kb upstream 0.5kb upstream 500 false Chr09: 33853096-33853595 Glycine max
Glyma.09G136600 0.5kb downstream 0.5kb downstream 4419 true Chr09: 33848677-33853095 Glycine max
Glyma.09G136600 0.5kb downstream 0.5kb downstream 500 false Chr09: 33848677-33849176 Glycine max
Glyma.09G136600 1.0kb upstream 1.0kb upstream 4919 true Chr09: 33849177-33854095 Glycine max
Glyma.09G136600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 33853096-33854095 Glycine max
Glyma.09G136600 1.0kb downstream 1.0kb downstream 4919 true Chr09: 33848177-33853095 Glycine max
Glyma.09G136600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 33848177-33849176 Glycine max
Glyma.09G136600 2.0kb upstream 2.0kb upstream 5919 true Chr09: 33849177-33855095 Glycine max
Glyma.09G136600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 33853096-33855095 Glycine max
Glyma.09G136600 2.0kb downstream 2.0kb downstream 5919 true Chr09: 33847177-33853095 Glycine max
Glyma.09G136600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 33847177-33849176 Glycine max
Glyma.09G136600 5.0kb upstream 5.0kb upstream 8919 true Chr09: 33849177-33858095 Glycine max
Glyma.09G136600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 33853096-33858095 Glycine max
Glyma.09G136600 5.0kb downstream 5.0kb downstream 8919 true Chr09: 33844177-33853095 Glycine max
Glyma.09G136600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 33844177-33849176 Glycine max
Glyma.09G136600 10.0kb upstream 10.0kb upstream 13919 true Chr09: 33849177-33863095 Glycine max
Glyma.09G136600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 33853096-33863095 Glycine max
Glyma.09G136600 10.0kb downstream 10.0kb downstream 13919 true Chr09: 33839177-33853095 Glycine max
Glyma.09G136600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 33839177-33849176 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791816 5273 Angiosperm View MSA
122300160 5265 Fabidae View MSA
124066883 5270 Rosid View MSA
123739634 5271 Pentapetalae View MSA
122794132 5272 Eudicot View MSA
121063105 5274 Embryophyte View MSA
123102888 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.868666 0.0 5.46866   Low
cufflinks 2.66206 0.0 10.5325    
cufflinks 2.46359 0.0 13.1338    
cufflinks 2.74018 0.0 14.262    
cufflinks 2.15362 0.0 11.8943    
cufflinks 5.86177 0.0 23.7768   High
cufflinks 4.88128 0.0 21.2482   High
cufflinks 3.37078 0.0 16.3533    
cufflinks 3.22979 0.0 12.077    
cufflinks 0.76       High
cufflinks 0.193       Low
cufflinks 0.501        
cufflinks 0.605       High
cufflinks 0.47        
cufflinks 0.136       Low
cufflinks 0.32        
cufflinks 0.187       Low
cufflinks 1.009       High
cufflinks 0.53        
cufflinks 0.261        
cufflinks 0.247        
cufflinks 0.346        
cufflinks 0.389        
cufflinks 0.274        
cufflinks 0.307        
cufflinks 0.209        

0 Strain