Gene : Glyma.09G129500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13343:SF13 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  1295
Name:  ? Glyma.09G129500 Secondary Identifier:  ? PAC:30483580
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G129500 0.5kb upstream 0.5kb upstream 8276 true Chr09: 32412380-32420655 Glycine max
Glyma.09G129500 0.5kb upstream 0.5kb upstream 500 false Chr09: 32412380-32412879 Glycine max
Glyma.09G129500 0.5kb downstream 0.5kb downstream 8276 true Chr09: 32412880-32421155 Glycine max
Glyma.09G129500 0.5kb downstream 0.5kb downstream 500 false Chr09: 32420656-32421155 Glycine max
Glyma.09G129500 1.0kb upstream 1.0kb upstream 8776 true Chr09: 32411880-32420655 Glycine max
Glyma.09G129500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 32411880-32412879 Glycine max
Glyma.09G129500 1.0kb downstream 1.0kb downstream 8776 true Chr09: 32412880-32421655 Glycine max
Glyma.09G129500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 32420656-32421655 Glycine max
Glyma.09G129500 2.0kb upstream 2.0kb upstream 9776 true Chr09: 32410880-32420655 Glycine max
Glyma.09G129500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 32410880-32412879 Glycine max
Glyma.09G129500 2.0kb downstream 2.0kb downstream 9776 true Chr09: 32412880-32422655 Glycine max
Glyma.09G129500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 32420656-32422655 Glycine max
Glyma.09G129500 5.0kb upstream 5.0kb upstream 12776 true Chr09: 32407880-32420655 Glycine max
Glyma.09G129500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 32407880-32412879 Glycine max
Glyma.09G129500 5.0kb downstream 5.0kb downstream 12776 true Chr09: 32412880-32425655 Glycine max
Glyma.09G129500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 32420656-32425655 Glycine max
Glyma.09G129500 10.0kb upstream 10.0kb upstream 17776 true Chr09: 32402880-32420655 Glycine max
Glyma.09G129500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 32402880-32412879 Glycine max
Glyma.09G129500 10.0kb downstream 10.0kb downstream 17776 true Chr09: 32412880-32430655 Glycine max
Glyma.09G129500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 32420656-32430655 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243231 5265 Fabidae Singleton cluster - no MSA
124066138 5270 Rosid View MSA
123741710 5271 Pentapetalae View MSA
122789997 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.0754 0.0 50.2714   High
cufflinks 7.30552 0.0 29.1241    
cufflinks 5.28872 0.0 21.8188    
cufflinks 4.868 0.0 20.7697    
cufflinks 3.26482 0.0 16.7018   Low
cufflinks 3.14436 0.0 14.4294   Low
cufflinks 5.59098 0.0 23.264    
cufflinks 4.47622 0.0 19.9877    
cufflinks 4.112 0.0 18.7674    
cufflinks 0.362        
cufflinks 0.151       Low
cufflinks 0.416        
cufflinks 0.297        
cufflinks 0.269        
cufflinks 0.175        
cufflinks 1.217       High
cufflinks 0.11       Low
cufflinks 0.421        
cufflinks 0.508        
cufflinks 1.934       High
cufflinks 0.186        
cufflinks 1.78       High
cufflinks 1.248       High
cufflinks 0.187        
cufflinks 1.586       High
cufflinks 0.135       Low

0 Strain