Gene : Glyma.09G116400 G. max Wm82.a2.v1
Defline:  (1 of 43) KOG4282 - Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain Genomic Order:  1164
Name:  ? Glyma.09G116400 Secondary Identifier:  ? PAC:30485760
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G116400 0.5kb upstream 0.5kb upstream 2924 true Chr09: 27000153-27003076 Glycine max
Glyma.09G116400 0.5kb upstream 0.5kb upstream 500 false Chr09: 27000153-27000652 Glycine max
Glyma.09G116400 0.5kb downstream 0.5kb downstream 2924 true Chr09: 27000653-27003576 Glycine max
Glyma.09G116400 0.5kb downstream 0.5kb downstream 500 false Chr09: 27003077-27003576 Glycine max
Glyma.09G116400 1.0kb upstream 1.0kb upstream 3424 true Chr09: 26999653-27003076 Glycine max
Glyma.09G116400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 26999653-27000652 Glycine max
Glyma.09G116400 1.0kb downstream 1.0kb downstream 3424 true Chr09: 27000653-27004076 Glycine max
Glyma.09G116400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 27003077-27004076 Glycine max
Glyma.09G116400 2.0kb upstream 2.0kb upstream 4424 true Chr09: 26998653-27003076 Glycine max
Glyma.09G116400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 26998653-27000652 Glycine max
Glyma.09G116400 2.0kb downstream 2.0kb downstream 4424 true Chr09: 27000653-27005076 Glycine max
Glyma.09G116400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 27003077-27005076 Glycine max
Glyma.09G116400 5.0kb upstream 5.0kb upstream 7424 true Chr09: 26995653-27003076 Glycine max
Glyma.09G116400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 26995653-27000652 Glycine max
Glyma.09G116400 5.0kb downstream 5.0kb downstream 7424 true Chr09: 27000653-27008076 Glycine max
Glyma.09G116400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 27003077-27008076 Glycine max
Glyma.09G116400 10.0kb upstream 10.0kb upstream 12424 true Chr09: 26990653-27003076 Glycine max
Glyma.09G116400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 26990653-27000652 Glycine max
Glyma.09G116400 10.0kb downstream 10.0kb downstream 12424 true Chr09: 27000653-27013076 Glycine max
Glyma.09G116400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 27003077-27013076 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307333 5265 Fabidae View MSA
124070678 5270 Rosid View MSA
123744900 5271 Pentapetalae View MSA
122796091 5272 Eudicot View MSA
122051331 5273 Angiosperm View MSA
121349901 5274 Embryophyte View MSA
123381491 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.6896 0.0 36.5506   High
cufflinks 3.84133 0.0 10.961    
cufflinks 3.55846 0.0 10.2373    
cufflinks 4.84984 0.0 13.4864    
cufflinks 1.39403 0.0 4.56215   Low
cufflinks 1.83779 0.0 5.79141    
cufflinks 7.16425 0.0 19.4065    
cufflinks 2.53842 0.0 7.62816    
cufflinks 1.44248 0.0 4.70248   Low
cufflinks 4.275        
cufflinks 39.256     High High
cufflinks 4.161        
cufflinks 1.399       Low
cufflinks 1.359       Low
cufflinks 30.867     High High
cufflinks 11.934     High  
cufflinks 6.56     High  
cufflinks 2.319       Low
cufflinks 3.394        
cufflinks 8.807     High  
cufflinks 66.234     High High
cufflinks 12.554     High  
cufflinks 8.326     High  
cufflinks 40.964     High High
cufflinks 10.655     High  
cufflinks 34.001     High High

0 Strain