Gene : Glyma.09G172200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12701:SF20 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MIG5 Genomic Order:  1722
Name:  ? Glyma.09G172200 Secondary Identifier:  ? PAC:30485373
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G172200 0.5kb upstream 0.5kb upstream 6388 true Chr09: 39690933-39697320 Glycine max
Glyma.09G172200 0.5kb upstream 0.5kb upstream 500 false Chr09: 39696821-39697320 Glycine max
Glyma.09G172200 0.5kb downstream 0.5kb downstream 6388 true Chr09: 39690433-39696820 Glycine max
Glyma.09G172200 0.5kb downstream 0.5kb downstream 500 false Chr09: 39690433-39690932 Glycine max
Glyma.09G172200 1.0kb upstream 1.0kb upstream 6888 true Chr09: 39690933-39697820 Glycine max
Glyma.09G172200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39696821-39697820 Glycine max
Glyma.09G172200 1.0kb downstream 1.0kb downstream 6888 true Chr09: 39689933-39696820 Glycine max
Glyma.09G172200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39689933-39690932 Glycine max
Glyma.09G172200 2.0kb upstream 2.0kb upstream 7888 true Chr09: 39690933-39698820 Glycine max
Glyma.09G172200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39696821-39698820 Glycine max
Glyma.09G172200 2.0kb downstream 2.0kb downstream 7888 true Chr09: 39688933-39696820 Glycine max
Glyma.09G172200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39688933-39690932 Glycine max
Glyma.09G172200 5.0kb upstream 5.0kb upstream 10888 true Chr09: 39690933-39701820 Glycine max
Glyma.09G172200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39696821-39701820 Glycine max
Glyma.09G172200 5.0kb downstream 5.0kb downstream 10888 true Chr09: 39685933-39696820 Glycine max
Glyma.09G172200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39685933-39690932 Glycine max
Glyma.09G172200 10.0kb upstream 10.0kb upstream 15888 true Chr09: 39690933-39706820 Glycine max
Glyma.09G172200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39696821-39706820 Glycine max
Glyma.09G172200 10.0kb downstream 10.0kb downstream 15888 true Chr09: 39680933-39696820 Glycine max
Glyma.09G172200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39680933-39690932 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311009 5265 Fabidae View MSA
124061614 5270 Rosid View MSA
123738808 5271 Pentapetalae View MSA
122789098 5272 Eudicot View MSA
122042109 5273 Angiosperm View MSA
121344883 5274 Embryophyte View MSA
123380122 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.8565 0.0 103.835 High Low
cufflinks 50.8419 0.0 135.701 High  
cufflinks 44.6089 0.0 119.012 High  
cufflinks 45.5167 0.0 121.433 High  
cufflinks 43.9385 0.0 117.232 High  
cufflinks 69.2692 0.0 186.413 High High
cufflinks 54.3415 0.0 145.153 High  
cufflinks 54.7937 0.0 146.432 High  
cufflinks 38.8628 0.0 103.832 High Low
cufflinks 6.642       High
cufflinks 3.566        
cufflinks 4.281        
cufflinks 5.851        
cufflinks 6.162       High
cufflinks 1.768       Low
cufflinks 4.714        
cufflinks 4.284        
cufflinks 4.947        
cufflinks 4.685        
cufflinks 4.039        
cufflinks 4.387        
cufflinks 4.764        
cufflinks 4.946        
cufflinks 4.604        
cufflinks 4.454        
cufflinks 5.196        

0 Strain