Gene : Glyma.09G172300 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1723
Name:  ? Glyma.09G172300 Secondary Identifier:  ? PAC:30486826
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G172300 0.5kb upstream 0.5kb upstream 3404 true Chr09: 39700613-39704016 Glycine max
Glyma.09G172300 0.5kb upstream 0.5kb upstream 500 false Chr09: 39700613-39701112 Glycine max
Glyma.09G172300 0.5kb downstream 0.5kb downstream 3404 true Chr09: 39701113-39704516 Glycine max
Glyma.09G172300 0.5kb downstream 0.5kb downstream 500 false Chr09: 39704017-39704516 Glycine max
Glyma.09G172300 1.0kb upstream 1.0kb upstream 3904 true Chr09: 39700113-39704016 Glycine max
Glyma.09G172300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39700113-39701112 Glycine max
Glyma.09G172300 1.0kb downstream 1.0kb downstream 3904 true Chr09: 39701113-39705016 Glycine max
Glyma.09G172300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39704017-39705016 Glycine max
Glyma.09G172300 2.0kb upstream 2.0kb upstream 4904 true Chr09: 39699113-39704016 Glycine max
Glyma.09G172300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39699113-39701112 Glycine max
Glyma.09G172300 2.0kb downstream 2.0kb downstream 4904 true Chr09: 39701113-39706016 Glycine max
Glyma.09G172300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39704017-39706016 Glycine max
Glyma.09G172300 5.0kb upstream 5.0kb upstream 7904 true Chr09: 39696113-39704016 Glycine max
Glyma.09G172300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39696113-39701112 Glycine max
Glyma.09G172300 5.0kb downstream 5.0kb downstream 7904 true Chr09: 39701113-39709016 Glycine max
Glyma.09G172300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39704017-39709016 Glycine max
Glyma.09G172300 10.0kb upstream 10.0kb upstream 12904 true Chr09: 39691113-39704016 Glycine max
Glyma.09G172300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39691113-39701112 Glycine max
Glyma.09G172300 10.0kb downstream 10.0kb downstream 12904 true Chr09: 39701113-39714016 Glycine max
Glyma.09G172300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39704017-39714016 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305220 5265 Fabidae View MSA
124065853 5270 Rosid View MSA
123740694 5271 Pentapetalae View MSA
122786557 5272 Eudicot View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.8128 0.0 6.10241    
cufflinks 2.55309 0.0 8.20493   High
cufflinks 1.30256 0.0 4.52001   Low
cufflinks 2.27004 0.0 7.40423    
cufflinks 1.54958 0.0 5.31373    
cufflinks 1.46274 0.0 5.04024    
cufflinks 2.6445 0.0 8.47551   High
cufflinks 1.66597 0.0 5.65307    
cufflinks 1.70053 0.0 5.76089    
cufflinks 0.882        
cufflinks 0.37       Low
cufflinks 1.612        
cufflinks 1.479        
cufflinks 1.774        
cufflinks 0.42       Low
cufflinks 1.267        
cufflinks 0.267       Low
cufflinks 2.075       High
cufflinks 2.031        
cufflinks 1.683        
cufflinks 0.268       Low
cufflinks 1.584        
cufflinks 1.79        
cufflinks 0.501        
cufflinks 1.729        
cufflinks 0.32       Low

0 Strain