Gene : Glyma.09G175400 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1754
Name:  ? Glyma.09G175400 Secondary Identifier:  ? PAC:30483005
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G175400 0.5kb upstream 0.5kb upstream 1267 true Chr09: 39962968-39964234 Glycine max
Glyma.09G175400 0.5kb upstream 0.5kb upstream 500 false Chr09: 39962968-39963467 Glycine max
Glyma.09G175400 0.5kb downstream 0.5kb downstream 1267 true Chr09: 39963468-39964734 Glycine max
Glyma.09G175400 0.5kb downstream 0.5kb downstream 500 false Chr09: 39964235-39964734 Glycine max
Glyma.09G175400 1.0kb upstream 1.0kb upstream 1767 true Chr09: 39962468-39964234 Glycine max
Glyma.09G175400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39962468-39963467 Glycine max
Glyma.09G175400 1.0kb downstream 1.0kb downstream 1767 true Chr09: 39963468-39965234 Glycine max
Glyma.09G175400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39964235-39965234 Glycine max
Glyma.09G175400 2.0kb upstream 2.0kb upstream 2767 true Chr09: 39961468-39964234 Glycine max
Glyma.09G175400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39961468-39963467 Glycine max
Glyma.09G175400 2.0kb downstream 2.0kb downstream 2767 true Chr09: 39963468-39966234 Glycine max
Glyma.09G175400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39964235-39966234 Glycine max
Glyma.09G175400 5.0kb upstream 5.0kb upstream 5767 true Chr09: 39958468-39964234 Glycine max
Glyma.09G175400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39958468-39963467 Glycine max
Glyma.09G175400 5.0kb downstream 5.0kb downstream 5767 true Chr09: 39963468-39969234 Glycine max
Glyma.09G175400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39964235-39969234 Glycine max
Glyma.09G175400 10.0kb upstream 10.0kb upstream 10767 true Chr09: 39953468-39964234 Glycine max
Glyma.09G175400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39953468-39963467 Glycine max
Glyma.09G175400 10.0kb downstream 10.0kb downstream 10767 true Chr09: 39963468-39974234 Glycine max
Glyma.09G175400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39964235-39974234 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315297 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.213547 0.0 0.869948 Low  
cufflinks 0.405222 0.0 1.60694    
cufflinks 0.335573 0.0 1.33595    
cufflinks 0.584488 0.0 2.28573   High
cufflinks 0.22625 0.0 0.919107 Low  
cufflinks 0.0984219 0.0 0.421789 Low Low
cufflinks 0.41714 0.0 1.65338    
cufflinks 0.516141 0.0 2.02903    
cufflinks 0.206621 0.0 0.841779 Low  
cufflinks 0.576        
cufflinks 0.129       Low
cufflinks 1.614        
cufflinks 0.568        
cufflinks 1.333        
cufflinks 0.344        
cufflinks 0.997        
cufflinks 0.158       Low
cufflinks 2.539       High
cufflinks 1.129        
cufflinks 1.646        
cufflinks 0.105       Low
cufflinks 1.33        
cufflinks 1.364        
cufflinks 0.297        
cufflinks 1.245        
cufflinks 0.2       Low

0 Strain