Gene : Glyma.09G165200 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  1652
Name:  ? Glyma.09G165200 Secondary Identifier:  ? PAC:30484323
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G165200 0.5kb upstream 0.5kb upstream 9362 true Chr09: 38923789-38933150 Glycine max
Glyma.09G165200 0.5kb upstream 0.5kb upstream 500 false Chr09: 38932651-38933150 Glycine max
Glyma.09G165200 0.5kb downstream 0.5kb downstream 9362 true Chr09: 38923289-38932650 Glycine max
Glyma.09G165200 0.5kb downstream 0.5kb downstream 500 false Chr09: 38923289-38923788 Glycine max
Glyma.09G165200 1.0kb upstream 1.0kb upstream 9862 true Chr09: 38923789-38933650 Glycine max
Glyma.09G165200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 38932651-38933650 Glycine max
Glyma.09G165200 1.0kb downstream 1.0kb downstream 9862 true Chr09: 38922789-38932650 Glycine max
Glyma.09G165200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 38922789-38923788 Glycine max
Glyma.09G165200 2.0kb upstream 2.0kb upstream 10862 true Chr09: 38923789-38934650 Glycine max
Glyma.09G165200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 38932651-38934650 Glycine max
Glyma.09G165200 2.0kb downstream 2.0kb downstream 10862 true Chr09: 38921789-38932650 Glycine max
Glyma.09G165200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 38921789-38923788 Glycine max
Glyma.09G165200 5.0kb upstream 5.0kb upstream 13862 true Chr09: 38923789-38937650 Glycine max
Glyma.09G165200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 38932651-38937650 Glycine max
Glyma.09G165200 5.0kb downstream 5.0kb downstream 13862 true Chr09: 38918789-38932650 Glycine max
Glyma.09G165200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 38918789-38923788 Glycine max
Glyma.09G165200 10.0kb upstream 10.0kb upstream 18862 true Chr09: 38923789-38942650 Glycine max
Glyma.09G165200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 38932651-38942650 Glycine max
Glyma.09G165200 10.0kb downstream 10.0kb downstream 18862 true Chr09: 38913789-38932650 Glycine max
Glyma.09G165200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 38913789-38923788 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299997 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.34913 0.0 25.8191    
cufflinks 5.81244 0.0 22.5849    
cufflinks 6.93196 0.0 25.5638    
cufflinks 7.89635 0.0 28.0067   High
cufflinks 7.13808 0.0 25.3998    
cufflinks 5.90289 0.0 22.8734    
cufflinks 6.48718 0.0 23.8437    
cufflinks 7.59184 0.0 27.1887    
cufflinks 4.64274 0.0 18.8912   Low
cufflinks 0.466        
cufflinks 0.608       High
cufflinks 0.349        
cufflinks 0.39        
cufflinks 0.364        
cufflinks 0.519       High
cufflinks 0.399        
cufflinks 0.643       High
cufflinks 0.345        
cufflinks 0.438        
cufflinks 0.404        
cufflinks 0.396        
cufflinks 0.333       Low
cufflinks 0.368        
cufflinks 0.43        
cufflinks 0.335       Low
cufflinks 0.421        

0 Strain