Gene : Glyma.09G169600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13471 - TETRATRICOPEPTIDE-LIKE HELICAL Genomic Order:  1696
Name:  ? Glyma.09G169600 Secondary Identifier:  ? PAC:30483824
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G169600 0.5kb upstream 0.5kb upstream 10322 true Chr09: 39419794-39430115 Glycine max
Glyma.09G169600 0.5kb upstream 0.5kb upstream 500 false Chr09: 39419794-39420293 Glycine max
Glyma.09G169600 0.5kb downstream 0.5kb downstream 10322 true Chr09: 39420294-39430615 Glycine max
Glyma.09G169600 0.5kb downstream 0.5kb downstream 500 false Chr09: 39430116-39430615 Glycine max
Glyma.09G169600 1.0kb upstream 1.0kb upstream 10822 true Chr09: 39419294-39430115 Glycine max
Glyma.09G169600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39419294-39420293 Glycine max
Glyma.09G169600 1.0kb downstream 1.0kb downstream 10822 true Chr09: 39420294-39431115 Glycine max
Glyma.09G169600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39430116-39431115 Glycine max
Glyma.09G169600 2.0kb upstream 2.0kb upstream 11822 true Chr09: 39418294-39430115 Glycine max
Glyma.09G169600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39418294-39420293 Glycine max
Glyma.09G169600 2.0kb downstream 2.0kb downstream 11822 true Chr09: 39420294-39432115 Glycine max
Glyma.09G169600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39430116-39432115 Glycine max
Glyma.09G169600 5.0kb upstream 5.0kb upstream 14822 true Chr09: 39415294-39430115 Glycine max
Glyma.09G169600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39415294-39420293 Glycine max
Glyma.09G169600 5.0kb downstream 5.0kb downstream 14822 true Chr09: 39420294-39435115 Glycine max
Glyma.09G169600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39430116-39435115 Glycine max
Glyma.09G169600 10.0kb upstream 10.0kb upstream 19822 true Chr09: 39410294-39430115 Glycine max
Glyma.09G169600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39410294-39420293 Glycine max
Glyma.09G169600 10.0kb downstream 10.0kb downstream 19822 true Chr09: 39420294-39440115 Glycine max
Glyma.09G169600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39430116-39440115 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026294 5273 Angiosperm View MSA
122303651 5265 Fabidae View MSA
124063605 5270 Rosid View MSA
123738966 5271 Pentapetalae View MSA
122791971 5272 Eudicot View MSA
121345312 5274 Embryophyte View MSA
123423930 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.38947 0.0 11.9023   High
cufflinks 3.65252 0.0 10.0187    
cufflinks 4.79313 0.0 12.9283   High
cufflinks 3.32641 0.0 9.18969    
cufflinks 3.25822 0.0 9.02511    
cufflinks 2.41431 0.0 6.89563   Low
cufflinks 3.33958 0.0 9.24284    
cufflinks 2.92846 0.0 8.1845    
cufflinks 3.65678 0.0 10.0314    
cufflinks 1.539       Low
cufflinks 2.568        
cufflinks 2.475        
cufflinks 2.103        
cufflinks 2.451        
cufflinks 2.749        
cufflinks 3.602        
cufflinks 0.922       Low
cufflinks 2.953        
cufflinks 2.743        
cufflinks 4.253       High
cufflinks 2.018        
cufflinks 4.143       High
cufflinks 2.552        
cufflinks 2.708        
cufflinks 4.094       High
cufflinks 1.835        

0 Strain