Gene : Glyma.09G170400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31421:SF0 - PROTEIN BASIC PENTACYSTEINE1-RELATED Genomic Order:  1704
Name:  ? Glyma.09G170400 Secondary Identifier:  ? PAC:30484619
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G170400 0.5kb upstream 0.5kb upstream 8698 true Chr09: 39524694-39533391 Glycine max
Glyma.09G170400 0.5kb upstream 0.5kb upstream 500 false Chr09: 39524694-39525193 Glycine max
Glyma.09G170400 0.5kb downstream 0.5kb downstream 8698 true Chr09: 39525194-39533891 Glycine max
Glyma.09G170400 0.5kb downstream 0.5kb downstream 500 false Chr09: 39533392-39533891 Glycine max
Glyma.09G170400 1.0kb upstream 1.0kb upstream 9198 true Chr09: 39524194-39533391 Glycine max
Glyma.09G170400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 39524194-39525193 Glycine max
Glyma.09G170400 1.0kb downstream 1.0kb downstream 9198 true Chr09: 39525194-39534391 Glycine max
Glyma.09G170400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 39533392-39534391 Glycine max
Glyma.09G170400 2.0kb upstream 2.0kb upstream 10198 true Chr09: 39523194-39533391 Glycine max
Glyma.09G170400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 39523194-39525193 Glycine max
Glyma.09G170400 2.0kb downstream 2.0kb downstream 10198 true Chr09: 39525194-39535391 Glycine max
Glyma.09G170400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 39533392-39535391 Glycine max
Glyma.09G170400 5.0kb upstream 5.0kb upstream 13198 true Chr09: 39520194-39533391 Glycine max
Glyma.09G170400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 39520194-39525193 Glycine max
Glyma.09G170400 5.0kb downstream 5.0kb downstream 13198 true Chr09: 39525194-39538391 Glycine max
Glyma.09G170400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 39533392-39538391 Glycine max
Glyma.09G170400 10.0kb upstream 10.0kb upstream 18198 true Chr09: 39515194-39533391 Glycine max
Glyma.09G170400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 39515194-39525193 Glycine max
Glyma.09G170400 10.0kb downstream 10.0kb downstream 18198 true Chr09: 39525194-39543391 Glycine max
Glyma.09G170400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 39533392-39543391 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254958 5265 Fabidae View MSA
124070545 5270 Rosid View MSA
123750720 5271 Pentapetalae View MSA
122788133 5272 Eudicot View MSA
122049801 5273 Angiosperm View MSA
121311594 5274 Embryophyte View MSA
123348870 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.5161 0.0 46.9169   Low
cufflinks 34.4128 0.0 112.876 High  
cufflinks 31.9007 0.0 99.5711 High  
cufflinks 17.0651 0.0 51.1018    
cufflinks 29.4544 0.0 88.8151 High  
cufflinks 22.6723 0.0 73.2666    
cufflinks 76.633 0.0 247.141 High High
cufflinks 16.6078 0.0 50.8256    
cufflinks 33.1108 0.0 100.924 High  
cufflinks 2.227       Low
cufflinks 6.341     High High
cufflinks 4.395        
cufflinks 2.731       Low
cufflinks 4.375        
cufflinks 7.223     High High
cufflinks 3.804        
cufflinks 2.351       Low
cufflinks 3.849        
cufflinks 4.743        
cufflinks 4.976        
cufflinks 4.111        
cufflinks 4.577        
cufflinks 2.942        
cufflinks 5.399        
cufflinks 4.358        
cufflinks 3.676        

0 Strain