Gene : Glyma.09G156900 G. max Wm82.a2.v1
Defline:  (1 of 5) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  1569
Name:  ? Glyma.09G156900 Secondary Identifier:  ? PAC:30484267
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G156900 0.5kb upstream 0.5kb upstream 7450 true Chr09: 38015114-38022563 Glycine max
Glyma.09G156900 0.5kb upstream 0.5kb upstream 500 false Chr09: 38022064-38022563 Glycine max
Glyma.09G156900 0.5kb downstream 0.5kb downstream 7450 true Chr09: 38014614-38022063 Glycine max
Glyma.09G156900 0.5kb downstream 0.5kb downstream 500 false Chr09: 38014614-38015113 Glycine max
Glyma.09G156900 1.0kb upstream 1.0kb upstream 7950 true Chr09: 38015114-38023063 Glycine max
Glyma.09G156900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 38022064-38023063 Glycine max
Glyma.09G156900 1.0kb downstream 1.0kb downstream 7950 true Chr09: 38014114-38022063 Glycine max
Glyma.09G156900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 38014114-38015113 Glycine max
Glyma.09G156900 2.0kb upstream 2.0kb upstream 8950 true Chr09: 38015114-38024063 Glycine max
Glyma.09G156900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 38022064-38024063 Glycine max
Glyma.09G156900 2.0kb downstream 2.0kb downstream 8950 true Chr09: 38013114-38022063 Glycine max
Glyma.09G156900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 38013114-38015113 Glycine max
Glyma.09G156900 5.0kb upstream 5.0kb upstream 11950 true Chr09: 38015114-38027063 Glycine max
Glyma.09G156900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 38022064-38027063 Glycine max
Glyma.09G156900 5.0kb downstream 5.0kb downstream 11950 true Chr09: 38010114-38022063 Glycine max
Glyma.09G156900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 38010114-38015113 Glycine max
Glyma.09G156900 10.0kb upstream 10.0kb upstream 16950 true Chr09: 38015114-38032063 Glycine max
Glyma.09G156900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 38022064-38032063 Glycine max
Glyma.09G156900 10.0kb downstream 10.0kb downstream 16950 true Chr09: 38005114-38022063 Glycine max
Glyma.09G156900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 38005114-38015113 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316476 5265 Fabidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.782 0.0 26.0896    
cufflinks 2.30505 0.0 7.8037   Low
cufflinks 8.33587 0.0 24.7355    
cufflinks 4.8249 0.0 14.6078    
cufflinks 26.5082 0.0 91.2668 High  
cufflinks 165.996 0.0 704.646 High High
cufflinks 3.29336 0.0 11.0357    
cufflinks 6.70103 0.0 19.9129    
cufflinks 21.5637 0.0 71.1525 High  
cufflinks 2.511        
cufflinks 46.46     High High
cufflinks 1.795        
cufflinks 18.05     High  
cufflinks 4.799        
cufflinks 5.217     High  
cufflinks 1.355        
cufflinks 48.134     High High
cufflinks 0.974       Low
cufflinks 1.371        
cufflinks 0.689       Low
cufflinks 40.686     High High
cufflinks 1.739        
cufflinks 2.746        
cufflinks 50.889     High High
cufflinks 0.851       Low
cufflinks 44.409     High High

0 Strain