Gene : Glyma.09G200500 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2005
Name:  ? Glyma.09G200500 Secondary Identifier:  ? PAC:30486187
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G200500 0.5kb upstream 0.5kb upstream 8743 true Chr09: 42478937-42487679 Glycine max
Glyma.09G200500 0.5kb upstream 0.5kb upstream 500 false Chr09: 42487180-42487679 Glycine max
Glyma.09G200500 0.5kb downstream 0.5kb downstream 8743 true Chr09: 42478437-42487179 Glycine max
Glyma.09G200500 0.5kb downstream 0.5kb downstream 500 false Chr09: 42478437-42478936 Glycine max
Glyma.09G200500 1.0kb upstream 1.0kb upstream 9243 true Chr09: 42478937-42488179 Glycine max
Glyma.09G200500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 42487180-42488179 Glycine max
Glyma.09G200500 1.0kb downstream 1.0kb downstream 9243 true Chr09: 42477937-42487179 Glycine max
Glyma.09G200500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 42477937-42478936 Glycine max
Glyma.09G200500 2.0kb upstream 2.0kb upstream 10243 true Chr09: 42478937-42489179 Glycine max
Glyma.09G200500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 42487180-42489179 Glycine max
Glyma.09G200500 2.0kb downstream 2.0kb downstream 10243 true Chr09: 42476937-42487179 Glycine max
Glyma.09G200500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 42476937-42478936 Glycine max
Glyma.09G200500 5.0kb upstream 5.0kb upstream 13243 true Chr09: 42478937-42492179 Glycine max
Glyma.09G200500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 42487180-42492179 Glycine max
Glyma.09G200500 5.0kb downstream 5.0kb downstream 13243 true Chr09: 42473937-42487179 Glycine max
Glyma.09G200500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 42473937-42478936 Glycine max
Glyma.09G200500 10.0kb upstream 10.0kb upstream 18243 true Chr09: 42478937-42497179 Glycine max
Glyma.09G200500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 42487180-42497179 Glycine max
Glyma.09G200500 10.0kb downstream 10.0kb downstream 18243 true Chr09: 42468937-42487179 Glycine max
Glyma.09G200500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 42468937-42478936 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242848 5265 Fabidae Singleton cluster - no MSA
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.815653 0.0 5.61769   High
cufflinks 0.0318206 0.0 1.17705 Low Low
cufflinks 0.180431 0.0 2.6196 Low  
cufflinks 0.128322 0.0 2.41978 Low  
cufflinks 0.186402 0.0 2.30198 Low  
cufflinks 0.122247 0.0 1.71831 Low  
cufflinks 0.222363 0.0 3.09807    
cufflinks 0.104731 0.0 2.59701 Low  
cufflinks 0.153876 0.0 2.35168 Low  
cufflinks 0.007     Low  
cufflinks 0.023     Low  
cufflinks 0.005     Low  
cufflinks 0.025     Low  
cufflinks 0.021     Low  
cufflinks 0.124       High
cufflinks 0.005     Low  
cufflinks 0.015     Low  
cufflinks 0.014     Low  
cufflinks 0.007     Low  
cufflinks 0.005     Low  
cufflinks 0.023     Low  
cufflinks 0.005     Low  
cufflinks 0.003     Low Low
cufflinks 0.064       High
cufflinks 0.005     Low  
cufflinks 0.016     Low  

0 Strain