Gene : Glyma.09G202000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11680//PTHR11680:SF8 - SERINE HYDROXYMETHYLTRANSFERASE Genomic Order:  2020
Name:  ? Glyma.09G202000 Secondary Identifier:  ? PAC:30486027
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G202000 0.5kb upstream 0.5kb upstream 7102 true Chr09: 42616219-42623320 Glycine max
Glyma.09G202000 0.5kb upstream 0.5kb upstream 500 false Chr09: 42616219-42616718 Glycine max
Glyma.09G202000 0.5kb downstream 0.5kb downstream 7102 true Chr09: 42616719-42623820 Glycine max
Glyma.09G202000 0.5kb downstream 0.5kb downstream 500 false Chr09: 42623321-42623820 Glycine max
Glyma.09G202000 1.0kb upstream 1.0kb upstream 7602 true Chr09: 42615719-42623320 Glycine max
Glyma.09G202000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 42615719-42616718 Glycine max
Glyma.09G202000 1.0kb downstream 1.0kb downstream 7602 true Chr09: 42616719-42624320 Glycine max
Glyma.09G202000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 42623321-42624320 Glycine max
Glyma.09G202000 2.0kb upstream 2.0kb upstream 8602 true Chr09: 42614719-42623320 Glycine max
Glyma.09G202000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 42614719-42616718 Glycine max
Glyma.09G202000 2.0kb downstream 2.0kb downstream 8602 true Chr09: 42616719-42625320 Glycine max
Glyma.09G202000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 42623321-42625320 Glycine max
Glyma.09G202000 5.0kb upstream 5.0kb upstream 11602 true Chr09: 42611719-42623320 Glycine max
Glyma.09G202000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 42611719-42616718 Glycine max
Glyma.09G202000 5.0kb downstream 5.0kb downstream 11602 true Chr09: 42616719-42628320 Glycine max
Glyma.09G202000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 42623321-42628320 Glycine max
Glyma.09G202000 10.0kb upstream 10.0kb upstream 16602 true Chr09: 42606719-42623320 Glycine max
Glyma.09G202000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 42606719-42616718 Glycine max
Glyma.09G202000 10.0kb downstream 10.0kb downstream 16602 true Chr09: 42616719-42633320 Glycine max
Glyma.09G202000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 42623321-42633320 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0166584 0.0 0.0853216 Low Low
cufflinks 60.5849 0.0 366.912 High High
cufflinks 2.57151 0.0 12.5504    
cufflinks 8.16189 0.0 34.9131    
cufflinks 11.0402 0.0 42.8616    
cufflinks 8.16875 0.0 33.41    
cufflinks 0.309282 0.0 2.27447    
cufflinks 2.78416 0.0 14.0311    
cufflinks 0.249507 0.0 1.67354 Low  
cufflinks 5.815       High
cufflinks 0.001     Low Low
cufflinks 2.273        
cufflinks 0.039     Low  
cufflinks 0.121        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.951        
cufflinks 0.009     Low Low
cufflinks 0.725        
cufflinks 8.645     High High
cufflinks 1.11        
cufflinks 0.028     Low  
cufflinks 1.884        
cufflinks 3.357        
cufflinks 0.004     Low Low
cufflinks 1.837        
cufflinks 0.045     Low  

0 Strain