Gene : Glyma.09G189900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31234:SF4 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  1899
Name:  ? Glyma.09G189900 Secondary Identifier:  ? PAC:30483979
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G189900 0.5kb upstream 0.5kb upstream 3554 true Chr09: 41452904-41456457 Glycine max
Glyma.09G189900 0.5kb upstream 0.5kb upstream 500 false Chr09: 41455958-41456457 Glycine max
Glyma.09G189900 0.5kb downstream 0.5kb downstream 3554 true Chr09: 41452404-41455957 Glycine max
Glyma.09G189900 0.5kb downstream 0.5kb downstream 500 false Chr09: 41452404-41452903 Glycine max
Glyma.09G189900 1.0kb upstream 1.0kb upstream 4054 true Chr09: 41452904-41456957 Glycine max
Glyma.09G189900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 41455958-41456957 Glycine max
Glyma.09G189900 1.0kb downstream 1.0kb downstream 4054 true Chr09: 41451904-41455957 Glycine max
Glyma.09G189900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 41451904-41452903 Glycine max
Glyma.09G189900 2.0kb upstream 2.0kb upstream 5054 true Chr09: 41452904-41457957 Glycine max
Glyma.09G189900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 41455958-41457957 Glycine max
Glyma.09G189900 2.0kb downstream 2.0kb downstream 5054 true Chr09: 41450904-41455957 Glycine max
Glyma.09G189900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 41450904-41452903 Glycine max
Glyma.09G189900 5.0kb upstream 5.0kb upstream 8054 true Chr09: 41452904-41460957 Glycine max
Glyma.09G189900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 41455958-41460957 Glycine max
Glyma.09G189900 5.0kb downstream 5.0kb downstream 8054 true Chr09: 41447904-41455957 Glycine max
Glyma.09G189900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 41447904-41452903 Glycine max
Glyma.09G189900 10.0kb upstream 10.0kb upstream 13054 true Chr09: 41452904-41465957 Glycine max
Glyma.09G189900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 41455958-41465957 Glycine max
Glyma.09G189900 10.0kb downstream 10.0kb downstream 13054 true Chr09: 41442904-41455957 Glycine max
Glyma.09G189900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 41442904-41452903 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308559 5265 Fabidae View MSA
124071575 5270 Rosid View MSA
123738145 5271 Pentapetalae View MSA
122793617 5272 Eudicot View MSA
122049008 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.96945 0.0 15.4744   Low
cufflinks 6.49442 0.0 19.4867    
cufflinks 12.7258 0.0 35.4509   High
cufflinks 16.8284 0.0 45.7428   High
cufflinks 8.83628 0.0 25.2862    
cufflinks 9.04444 0.0 25.9121    
cufflinks 7.70884 0.0 22.5512    
cufflinks 8.06323 0.0 23.4889    
cufflinks 8.04655 0.0 23.3595    
cufflinks 0.908       Low
cufflinks 1.253        
cufflinks 2.5       High
cufflinks 1.326        
cufflinks 1.079        
cufflinks 1.346        
cufflinks 1.459        
cufflinks 0.623       Low
cufflinks 1.504        
cufflinks 1.307        
cufflinks 1.748        
cufflinks 1.038        
cufflinks 1.622        
cufflinks 1.063        
cufflinks 1.428        
cufflinks 1.604        
cufflinks 0.8       Low

0 Strain