Gene : Glyma.09G181000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR33428:SF2 - CHLOROPHYLLASE-1 Genomic Order:  1810
Name:  ? Glyma.09G181000 Secondary Identifier:  ? PAC:30485748
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5098 Glycine max pathologic  
Gmax PWY-6927 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G181000 0.5kb upstream 0.5kb upstream 2738 true Chr09: 40592160-40594897 Glycine max
Glyma.09G181000 0.5kb upstream 0.5kb upstream 500 false Chr09: 40592160-40592659 Glycine max
Glyma.09G181000 0.5kb downstream 0.5kb downstream 2738 true Chr09: 40592660-40595397 Glycine max
Glyma.09G181000 0.5kb downstream 0.5kb downstream 500 false Chr09: 40594898-40595397 Glycine max
Glyma.09G181000 1.0kb upstream 1.0kb upstream 3238 true Chr09: 40591660-40594897 Glycine max
Glyma.09G181000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 40591660-40592659 Glycine max
Glyma.09G181000 1.0kb downstream 1.0kb downstream 3238 true Chr09: 40592660-40595897 Glycine max
Glyma.09G181000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 40594898-40595897 Glycine max
Glyma.09G181000 2.0kb upstream 2.0kb upstream 4238 true Chr09: 40590660-40594897 Glycine max
Glyma.09G181000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 40590660-40592659 Glycine max
Glyma.09G181000 2.0kb downstream 2.0kb downstream 4238 true Chr09: 40592660-40596897 Glycine max
Glyma.09G181000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 40594898-40596897 Glycine max
Glyma.09G181000 5.0kb upstream 5.0kb upstream 7238 true Chr09: 40587660-40594897 Glycine max
Glyma.09G181000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 40587660-40592659 Glycine max
Glyma.09G181000 5.0kb downstream 5.0kb downstream 7238 true Chr09: 40592660-40599897 Glycine max
Glyma.09G181000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 40594898-40599897 Glycine max
Glyma.09G181000 10.0kb upstream 10.0kb upstream 12238 true Chr09: 40582660-40594897 Glycine max
Glyma.09G181000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 40582660-40592659 Glycine max
Glyma.09G181000 10.0kb downstream 10.0kb downstream 12238 true Chr09: 40592660-40604897 Glycine max
Glyma.09G181000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 40594898-40604897 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026648 5273 Angiosperm View MSA
122312709 5265 Fabidae View MSA
124064718 5270 Rosid View MSA
123753508 5271 Pentapetalae View MSA
122795782 5272 Eudicot View MSA
121296450 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.147101 0.0 0.585525 Low Low
cufflinks 34.425 0.0 91.9049 High High
cufflinks 2.81044 0.0 9.43802    
cufflinks 0.329113 0.0 1.27006    
cufflinks 1.22339 0.0 4.42787    
cufflinks 4.02082 0.0 12.8918    
cufflinks 0.216542 0.0 0.849485   Low
cufflinks 5.12055 0.0 15.8794    
cufflinks 1.43638 0.0 5.13704    
cufflinks 3.06        
cufflinks 0.167       Low
cufflinks 2.485        
cufflinks 0.827        
cufflinks 0.236       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.48       High
cufflinks 0.614        
cufflinks 2.208        
cufflinks 33.0     High High
cufflinks 1.368        
cufflinks 0.267       Low
cufflinks 2.616        
cufflinks 3.303        
cufflinks 0.145       Low
cufflinks 3.875        
cufflinks 0.267       Low

0 Strain