Gene : Glyma.09G231000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12866:SF2 - UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 Genomic Order:  2310
Name:  ? Glyma.09G231000 Secondary Identifier:  ? PAC:30483042
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G231000 0.5kb upstream 0.5kb upstream 4359 true Chr09: 45443954-45448312 Glycine max
Glyma.09G231000 0.5kb upstream 0.5kb upstream 500 false Chr09: 45447813-45448312 Glycine max
Glyma.09G231000 0.5kb downstream 0.5kb downstream 4359 true Chr09: 45443454-45447812 Glycine max
Glyma.09G231000 0.5kb downstream 0.5kb downstream 500 false Chr09: 45443454-45443953 Glycine max
Glyma.09G231000 1.0kb upstream 1.0kb upstream 4859 true Chr09: 45443954-45448812 Glycine max
Glyma.09G231000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 45447813-45448812 Glycine max
Glyma.09G231000 1.0kb downstream 1.0kb downstream 4859 true Chr09: 45442954-45447812 Glycine max
Glyma.09G231000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 45442954-45443953 Glycine max
Glyma.09G231000 2.0kb upstream 2.0kb upstream 5859 true Chr09: 45443954-45449812 Glycine max
Glyma.09G231000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 45447813-45449812 Glycine max
Glyma.09G231000 2.0kb downstream 2.0kb downstream 5859 true Chr09: 45441954-45447812 Glycine max
Glyma.09G231000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 45441954-45443953 Glycine max
Glyma.09G231000 5.0kb upstream 5.0kb upstream 8859 true Chr09: 45443954-45452812 Glycine max
Glyma.09G231000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 45447813-45452812 Glycine max
Glyma.09G231000 5.0kb downstream 5.0kb downstream 8859 true Chr09: 45438954-45447812 Glycine max
Glyma.09G231000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 45438954-45443953 Glycine max
Glyma.09G231000 10.0kb upstream 10.0kb upstream 13859 true Chr09: 45443954-45457812 Glycine max
Glyma.09G231000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 45447813-45457812 Glycine max
Glyma.09G231000 10.0kb downstream 10.0kb downstream 13859 true Chr09: 45433954-45447812 Glycine max
Glyma.09G231000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 45433954-45443953 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030392 5273 Angiosperm View MSA
122243295 5265 Fabidae Singleton cluster - no MSA
123987839 5270 Rosid Singleton cluster - no MSA
123563074 5271 Pentapetalae Singleton cluster - no MSA
122597856 5272 Eudicot Singleton cluster - no MSA
121299570 5274 Embryophyte View MSA
123426307 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.587 0.0 41.07    
cufflinks 13.4084 0.0 38.0922    
cufflinks 32.5358 0.0 87.0102 High High
cufflinks 14.5343 0.0 40.9236    
cufflinks 13.6769 0.0 38.7161    
cufflinks 35.5729 0.0 94.9987 High High
cufflinks 10.7958 0.0 31.4916   Low
cufflinks 15.9266 0.0 44.3667    
cufflinks 17.5742 0.0 48.5739    
cufflinks 4.64       Low
cufflinks 12.198     High High
cufflinks 7.373     High  
cufflinks 5.392        
cufflinks 4.564       Low
cufflinks 7.23     High  
cufflinks 6.364        
cufflinks 4.812        
cufflinks 6.809        
cufflinks 5.022        
cufflinks 7.489     High  
cufflinks 9.84     High High
cufflinks 6.809        
cufflinks 3.896       Low
cufflinks 12.694     High High
cufflinks 6.913     High  
cufflinks 9.289     High  

0 Strain