Gene : Glyma.09G254500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  2545
Name:  ? Glyma.09G254500 Secondary Identifier:  ? PAC:30486310
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7039 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G254500 0.5kb upstream 0.5kb upstream 4592 true Chr09: 47384247-47388838 Glycine max
Glyma.09G254500 0.5kb upstream 0.5kb upstream 500 false Chr09: 47388339-47388838 Glycine max
Glyma.09G254500 0.5kb downstream 0.5kb downstream 4592 true Chr09: 47383747-47388338 Glycine max
Glyma.09G254500 0.5kb downstream 0.5kb downstream 500 false Chr09: 47383747-47384246 Glycine max
Glyma.09G254500 1.0kb upstream 1.0kb upstream 5092 true Chr09: 47384247-47389338 Glycine max
Glyma.09G254500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47388339-47389338 Glycine max
Glyma.09G254500 1.0kb downstream 1.0kb downstream 5092 true Chr09: 47383247-47388338 Glycine max
Glyma.09G254500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47383247-47384246 Glycine max
Glyma.09G254500 2.0kb upstream 2.0kb upstream 6092 true Chr09: 47384247-47390338 Glycine max
Glyma.09G254500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47388339-47390338 Glycine max
Glyma.09G254500 2.0kb downstream 2.0kb downstream 6092 true Chr09: 47382247-47388338 Glycine max
Glyma.09G254500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47382247-47384246 Glycine max
Glyma.09G254500 5.0kb upstream 5.0kb upstream 9092 true Chr09: 47384247-47393338 Glycine max
Glyma.09G254500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47388339-47393338 Glycine max
Glyma.09G254500 5.0kb downstream 5.0kb downstream 9092 true Chr09: 47379247-47388338 Glycine max
Glyma.09G254500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47379247-47384246 Glycine max
Glyma.09G254500 10.0kb upstream 10.0kb upstream 14092 true Chr09: 47384247-47398338 Glycine max
Glyma.09G254500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47388339-47398338 Glycine max
Glyma.09G254500 10.0kb downstream 10.0kb downstream 14092 true Chr09: 47374247-47388338 Glycine max
Glyma.09G254500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47374247-47384246 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303667 5265 Fabidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.58895 0.0 11.1361    
cufflinks 4.81978 0.0 14.3473   High
cufflinks 3.18099 0.0 9.97609    
cufflinks 3.81429 0.0 11.7187    
cufflinks 3.67246 0.0 11.3675    
cufflinks 2.41522 0.0 7.92243   Low
cufflinks 4.0371 0.0 12.3384    
cufflinks 3.43208 0.0 10.7094    
cufflinks 3.87193 0.0 11.8749    
cufflinks 1.814        
cufflinks 0.714       Low
cufflinks 2.978        
cufflinks 1.594        
cufflinks 2.482        
cufflinks 1.358        
cufflinks 2.981        
cufflinks 0.881       Low
cufflinks 3.823       High
cufflinks 2.668        
cufflinks 4.1       High
cufflinks 0.74       Low
cufflinks 3.566        
cufflinks 3.803       High
cufflinks 0.7       Low
cufflinks 3.459        
cufflinks 0.676       Low

0 Strain