Gene : Glyma.09G258000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10314:SF80 - BIFUNCTIONAL L-3-CYANOALANINE SYNTHASE/CYSTEINE SYNTHASE C1, MITOCHONDRIAL Genomic Order:  2580
Name:  ? Glyma.09G258000 Secondary Identifier:  ? PAC:30486010
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CYSTSYN-PWY Glycine max pathologic  
Gmax PWY-6936 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G258000 0.5kb upstream 0.5kb upstream 4311 true Chr09: 47691284-47695594 Glycine max
Glyma.09G258000 0.5kb upstream 0.5kb upstream 500 false Chr09: 47695095-47695594 Glycine max
Glyma.09G258000 0.5kb downstream 0.5kb downstream 4311 true Chr09: 47690784-47695094 Glycine max
Glyma.09G258000 0.5kb downstream 0.5kb downstream 500 false Chr09: 47690784-47691283 Glycine max
Glyma.09G258000 1.0kb upstream 1.0kb upstream 4811 true Chr09: 47691284-47696094 Glycine max
Glyma.09G258000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47695095-47696094 Glycine max
Glyma.09G258000 1.0kb downstream 1.0kb downstream 4811 true Chr09: 47690284-47695094 Glycine max
Glyma.09G258000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47690284-47691283 Glycine max
Glyma.09G258000 2.0kb upstream 2.0kb upstream 5811 true Chr09: 47691284-47697094 Glycine max
Glyma.09G258000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47695095-47697094 Glycine max
Glyma.09G258000 2.0kb downstream 2.0kb downstream 5811 true Chr09: 47689284-47695094 Glycine max
Glyma.09G258000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47689284-47691283 Glycine max
Glyma.09G258000 5.0kb upstream 5.0kb upstream 8811 true Chr09: 47691284-47700094 Glycine max
Glyma.09G258000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47695095-47700094 Glycine max
Glyma.09G258000 5.0kb downstream 5.0kb downstream 8811 true Chr09: 47686284-47695094 Glycine max
Glyma.09G258000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47686284-47691283 Glycine max
Glyma.09G258000 10.0kb upstream 10.0kb upstream 13811 true Chr09: 47691284-47705094 Glycine max
Glyma.09G258000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47695095-47705094 Glycine max
Glyma.09G258000 10.0kb downstream 10.0kb downstream 13811 true Chr09: 47681284-47695094 Glycine max
Glyma.09G258000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47681284-47691283 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040912 5273 Angiosperm View MSA
122299589 5265 Fabidae View MSA
124062527 5270 Rosid View MSA
123753614 5271 Pentapetalae View MSA
122790357 5272 Eudicot View MSA
121309765 5274 Embryophyte View MSA
123347430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.5386 0.0 77.0478 High  
cufflinks 5.18018 0.0 22.712   Low
cufflinks 10.6332 0.0 32.6337    
cufflinks 7.94119 0.0 25.416    
cufflinks 42.5991 0.0 172.409 High High
cufflinks 27.6239 0.0 104.533 High  
cufflinks 5.99829 0.0 25.6678    
cufflinks 5.27128 0.0 18.4419   Low
cufflinks 43.8434 0.0 178.687 High High
cufflinks 1.32       Low
cufflinks 4.587        
cufflinks 4.495        
cufflinks 22.146     High High
cufflinks 16.632     High High
cufflinks 4.175        
cufflinks 3.97        
cufflinks 4.905        
cufflinks 1.038       Low
cufflinks 1.031       Low
cufflinks 1.913        
cufflinks 8.819     High  
cufflinks 3.037        
cufflinks 3.543        
cufflinks 13.914     High High
cufflinks 2.499        
cufflinks 7.415     High  

0 Strain