Gene : Glyma.09G258600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34797:SF1 - EXPRESSED PROTEIN Genomic Order:  2586
Name:  ? Glyma.09G258600 Secondary Identifier:  ? PAC:30485688
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G258600 0.5kb upstream 0.5kb upstream 3646 true Chr09: 47730951-47734596 Glycine max
Glyma.09G258600 0.5kb upstream 0.5kb upstream 500 false Chr09: 47730951-47731450 Glycine max
Glyma.09G258600 0.5kb downstream 0.5kb downstream 3646 true Chr09: 47731451-47735096 Glycine max
Glyma.09G258600 0.5kb downstream 0.5kb downstream 500 false Chr09: 47734597-47735096 Glycine max
Glyma.09G258600 1.0kb upstream 1.0kb upstream 4146 true Chr09: 47730451-47734596 Glycine max
Glyma.09G258600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47730451-47731450 Glycine max
Glyma.09G258600 1.0kb downstream 1.0kb downstream 4146 true Chr09: 47731451-47735596 Glycine max
Glyma.09G258600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47734597-47735596 Glycine max
Glyma.09G258600 2.0kb upstream 2.0kb upstream 5146 true Chr09: 47729451-47734596 Glycine max
Glyma.09G258600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47729451-47731450 Glycine max
Glyma.09G258600 2.0kb downstream 2.0kb downstream 5146 true Chr09: 47731451-47736596 Glycine max
Glyma.09G258600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47734597-47736596 Glycine max
Glyma.09G258600 5.0kb upstream 5.0kb upstream 8146 true Chr09: 47726451-47734596 Glycine max
Glyma.09G258600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47726451-47731450 Glycine max
Glyma.09G258600 5.0kb downstream 5.0kb downstream 8146 true Chr09: 47731451-47739596 Glycine max
Glyma.09G258600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47734597-47739596 Glycine max
Glyma.09G258600 10.0kb upstream 10.0kb upstream 13146 true Chr09: 47721451-47734596 Glycine max
Glyma.09G258600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47721451-47731450 Glycine max
Glyma.09G258600 10.0kb downstream 10.0kb downstream 13146 true Chr09: 47731451-47744596 Glycine max
Glyma.09G258600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47734597-47744596 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041192 5273 Angiosperm View MSA
122305504 5265 Fabidae View MSA
124069169 5270 Rosid View MSA
123746892 5271 Pentapetalae View MSA
122786328 5272 Eudicot View MSA
121349557 5274 Embryophyte View MSA
123381356 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.895 0.0 45.1466    
cufflinks 14.7195 0.0 39.4667    
cufflinks 39.8493 0.0 109.165 High High
cufflinks 48.8609 0.0 136.225 High High
cufflinks 11.4514 0.0 31.0633   Low
cufflinks 33.7576 0.0 91.2562 High  
cufflinks 20.8901 0.0 55.7353    
cufflinks 34.753 0.0 94.2758 High  
cufflinks 16.8468 0.0 45.0206    
cufflinks 8.676     High  
cufflinks 73.329     High High
cufflinks 15.25     High  
cufflinks 8.756     High  
cufflinks 6.214       Low
cufflinks 57.866     High High
cufflinks 11.282     High  
cufflinks 21.796     High  
cufflinks 9.54     High  
cufflinks 9.245     High  
cufflinks 13.328     High  
cufflinks 76.478     High High
cufflinks 12.583     High  
cufflinks 7.061       Low
cufflinks 48.897     High High
cufflinks 13.669     High  
cufflinks 42.383     High High

0 Strain