Gene : Glyma.09G250800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  2508
Name:  ? Glyma.09G250800 Secondary Identifier:  ? PAC:30484335
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G250800 0.5kb upstream 0.5kb upstream 2729 true Chr09: 47146642-47149370 Glycine max
Glyma.09G250800 0.5kb upstream 0.5kb upstream 500 false Chr09: 47146642-47147141 Glycine max
Glyma.09G250800 0.5kb downstream 0.5kb downstream 2729 true Chr09: 47147142-47149870 Glycine max
Glyma.09G250800 0.5kb downstream 0.5kb downstream 500 false Chr09: 47149371-47149870 Glycine max
Glyma.09G250800 1.0kb upstream 1.0kb upstream 3229 true Chr09: 47146142-47149370 Glycine max
Glyma.09G250800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 47146142-47147141 Glycine max
Glyma.09G250800 1.0kb downstream 1.0kb downstream 3229 true Chr09: 47147142-47150370 Glycine max
Glyma.09G250800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 47149371-47150370 Glycine max
Glyma.09G250800 2.0kb upstream 2.0kb upstream 4229 true Chr09: 47145142-47149370 Glycine max
Glyma.09G250800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 47145142-47147141 Glycine max
Glyma.09G250800 2.0kb downstream 2.0kb downstream 4229 true Chr09: 47147142-47151370 Glycine max
Glyma.09G250800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 47149371-47151370 Glycine max
Glyma.09G250800 5.0kb upstream 5.0kb upstream 7229 true Chr09: 47142142-47149370 Glycine max
Glyma.09G250800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 47142142-47147141 Glycine max
Glyma.09G250800 5.0kb downstream 5.0kb downstream 7229 true Chr09: 47147142-47154370 Glycine max
Glyma.09G250800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 47149371-47154370 Glycine max
Glyma.09G250800 10.0kb upstream 10.0kb upstream 12229 true Chr09: 47137142-47149370 Glycine max
Glyma.09G250800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 47137142-47147141 Glycine max
Glyma.09G250800 10.0kb downstream 10.0kb downstream 12229 true Chr09: 47147142-47159370 Glycine max
Glyma.09G250800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 47149371-47159370 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122306566 5265 Fabidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 332.194 0.0 1282.38 High High
cufflinks 169.794 0.0 551.718 High  
cufflinks 71.866 0.0 203.806 High  
cufflinks 73.1651 0.0 208.186 High  
cufflinks 10.6758 0.0 29.4148   Low
cufflinks 11.0849 0.0 30.4645   Low
cufflinks 33.8088 0.0 90.7842 High  
cufflinks 93.2155 0.0 275.079 High  
cufflinks 6.44359 0.0 18.7527   Low
cufflinks 118.163     High  
cufflinks 0.269        
cufflinks 48.097     High  
cufflinks 0.343        
cufflinks 0.093       Low
cufflinks 1.208        
cufflinks 498.515     High High
cufflinks 0.126       Low
cufflinks 54.603     High  
cufflinks 100.805     High  
cufflinks 585.194     High High
cufflinks 0.321        
cufflinks 569.065     High High
cufflinks 367.694     High High
cufflinks 0.148       Low
cufflinks 549.322     High High
cufflinks 0.343        

0 Strain