Gene : Glyma.09G247000 G. max Wm82.a2.v1
Defline:  (1 of 22) PTHR23042//PTHR23042:SF57 - CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS Genomic Order:  2470
Name:  ? Glyma.09G247000 Secondary Identifier:  ? PAC:30483607
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.09G247000 0.5kb upstream 0.5kb upstream 1910 true Chr09: 46850618-46852527 Glycine max
Glyma.09G247000 0.5kb upstream 0.5kb upstream 500 false Chr09: 46852028-46852527 Glycine max
Glyma.09G247000 0.5kb downstream 0.5kb downstream 1910 true Chr09: 46850118-46852027 Glycine max
Glyma.09G247000 0.5kb downstream 0.5kb downstream 500 false Chr09: 46850118-46850617 Glycine max
Glyma.09G247000 1.0kb upstream 1.0kb upstream 2410 true Chr09: 46850618-46853027 Glycine max
Glyma.09G247000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 46852028-46853027 Glycine max
Glyma.09G247000 1.0kb downstream 1.0kb downstream 2410 true Chr09: 46849618-46852027 Glycine max
Glyma.09G247000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 46849618-46850617 Glycine max
Glyma.09G247000 2.0kb upstream 2.0kb upstream 3410 true Chr09: 46850618-46854027 Glycine max
Glyma.09G247000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 46852028-46854027 Glycine max
Glyma.09G247000 2.0kb downstream 2.0kb downstream 3410 true Chr09: 46848618-46852027 Glycine max
Glyma.09G247000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 46848618-46850617 Glycine max
Glyma.09G247000 5.0kb upstream 5.0kb upstream 6410 true Chr09: 46850618-46857027 Glycine max
Glyma.09G247000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 46852028-46857027 Glycine max
Glyma.09G247000 5.0kb downstream 5.0kb downstream 6410 true Chr09: 46845618-46852027 Glycine max
Glyma.09G247000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 46845618-46850617 Glycine max
Glyma.09G247000 10.0kb upstream 10.0kb upstream 11410 true Chr09: 46850618-46862027 Glycine max
Glyma.09G247000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 46852028-46862027 Glycine max
Glyma.09G247000 10.0kb downstream 10.0kb downstream 11410 true Chr09: 46840618-46852027 Glycine max
Glyma.09G247000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 46840618-46850617 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122243228 5265 Fabidae Singleton cluster - no MSA
124071419 5270 Rosid View MSA
123749435 5271 Pentapetalae View MSA
122795103 5272 Eudicot View MSA
122042005 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.79262 0.0 9.84148    
cufflinks 9.49749 0.0 28.6624   High
cufflinks 1.17947 0.0 4.36858    
cufflinks 4.37671 0.0 14.684    
cufflinks 0.337231 0.0 1.32446   Low
cufflinks 0.250194 0.0 0.992635 Low Low
cufflinks 2.97217 0.0 10.4362    
cufflinks 1.8524 0.0 6.708    
cufflinks 1.6535 0.0 6.03171    
cufflinks 0.997        
cufflinks 0.083       Low
cufflinks 1.388        
cufflinks 0.334        
cufflinks 0.108        
cufflinks 0.013     Low Low
cufflinks 3.819       High
cufflinks 0.291        
cufflinks 1.145        
cufflinks 3.462        
cufflinks 2.987        
cufflinks 0.089       Low
cufflinks 3.874       High
cufflinks 6.196       High
cufflinks 0.222        
cufflinks 2.459        
cufflinks 0.163        

0 Strain